Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I20
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    27   1.0  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    27   1.0  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   2.4  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    26   2.4  
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch...    26   3.1  
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    25   4.2  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    24   9.6  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   9.6  

>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 19/98 (19%), Positives = 39/98 (39%)
 Frame = +1

Query: 106 ISGLFHNSVSIDYDSWLNIKIEHTLNCNGEKYCHRGSISLKSMRAGTSIIDQIQFSKQHI 285
           +S    +  S D  ++LN+ +    + +     H  +  L   ++ TS+ D +  + Q +
Sbjct: 191 VSNSNSSDTSTDDQAYLNVSVSENEHADRSIKTHSSAPPLNQQKSSTSVNDAVSKAIQLV 250

Query: 286 EELKRLAEVDGFYTLKSTVTSTENNKGTEFLSSMKAIA 399
           +    L  +       ST    ++ K T+  S   A A
Sbjct: 251 KSTSDLGSLS--TNTSSTAQKNKSRKPTKSFSDAVAAA 286


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 334 STVTSTENNKGTEFLSSMKAIAFLDSGFSDTINSWVLPN 450
           + + ++ENNKG+E   S K    +DS  S  +N ++ P+
Sbjct: 244 AALANSENNKGSEAGVSAKTNPDMDSDSSAIVNEFLKPD 282


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 18/72 (25%), Positives = 36/72 (50%)
 Frame = +1

Query: 67  VLKMHRYISIFICISGLFHNSVSIDYDSWLNIKIEHTLNCNGEKYCHRGSISLKSMRAGT 246
           VL  H Y +  + +         I+ D +  +K+EH LN        + ++SLKS++ GT
Sbjct: 520 VLTFHGYEAGLLMVERSRQTERVINKDIFA-LKMEHLLN-----EIQKSTLSLKSLQIGT 573

Query: 247 SIIDQIQFSKQH 282
            + + +  +++H
Sbjct: 574 ILQEVMTMAREH 585


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 50  LKVQIVY*KCIDIFLFLYVLVVYFIIRSVSTTI 148
           LKV  V   CI IFL +Y L + ++++ V+  +
Sbjct: 384 LKVPSVINDCISIFLEIYELNISYMVQEVTVVM 416


>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 96

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = +1

Query: 145 DSWLNIKIEHTLNCNGEKYCHRGSISLKSMRAGTSIIDQIQFSKQHIEEL 294
           D +LN+K+E+    +  KY H  ++  K +    S++  +  S  +++ +
Sbjct: 33  DQFLNVKLENISVVDASKYPHMAAV--KDLFIRGSVVRYVHMSSAYVDTI 80


>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 160 IKIEHTLNCNGEKYCHRGSISL 225
           + +E+T NC+ ++YC + S+ L
Sbjct: 82  VGLEYTRNCDCDQYCPKCSVEL 103


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 6/22 (27%), Positives = 16/22 (72%)
 Frame = +2

Query: 86  IFLFLYVLVVYFIIRSVSTTIV 151
           +FL++Y+   +F++RS+   ++
Sbjct: 234 VFLYMYLATAFFLLRSLKYAVL 255


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 83  DIFLFLYVLVVYFI 124
           D FL+LYVL  YFI
Sbjct: 194 DGFLYLYVLFTYFI 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,922
Number of Sequences: 5004
Number of extensions: 36643
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)