Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I20
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358...    29   1.8  
04_04_0966 + 29776340-29776433,29776581-29776682,29777038-297771...    28   3.1  
03_02_0677 + 10343089-10343604,10344316-10344462,10344539-103446...    28   4.1  
01_06_1132 - 34769800-34769955,34770098-34770157,34770259-347703...    28   4.1  
10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971...    27   5.4  
06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255           27   9.5  

>02_04_0371 +
           22434710-22435102,22435428-22435624,22435707-22435824,
           22436458-22436574,22436702-22436803,22437431-22437487,
           22437976-22438044,22438423-22438533,22438597-22438791,
           22439023-22439121,22439656-22440222,22440344-22440568,
           22441036-22441338,22441640-22441707,22441947-22442105,
           22442230-22442475,22442549-22442680,22443243-22443351,
           22444131-22444283,22444359-22444601,22444695-22444862,
           22445013-22445156,22445238-22445699,22446495-22446791,
           22446867-22447024,22447139-22447246,22447474-22447732
          Length = 1752

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -3

Query: 296 FNSSICCFENC---IWSMIDVPALILFSEML 213
           F  S+C FE+C   IWS  D  A I +  M+
Sbjct: 262 FEDSVCLFESCFSQIWSSYDSSATICYENMV 292


>04_04_0966 +
           29776340-29776433,29776581-29776682,29777038-29777154,
           29777428-29777621,29777702-29777807,29777908-29778055,
           29778201-29778337,29778436-29778602,29778681-29778974
          Length = 452

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 277 QHIEELKRLAEVDGFYTLKSTVTSTENNKGTEFLSSMKAIAF 402
           +++EELKRLA  +G       VTS   ++  E LS+   + +
Sbjct: 311 EYLEELKRLAASEGVSEHVKFVTSCSTSERNELLSNCLCVLY 352


>03_02_0677 +
           10343089-10343604,10344316-10344462,10344539-10344643,
           10345411-10345509,10345662-10345814
          Length = 339

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 133 SIDYDSWLNIKIEHTLNCNGEKYCHRGSISLKSMRAGTSIIDQIQFSKQHIEEL-KRLAE 309
           ++D D  +++  +    C  E   H+G + +K      S  +   F+ +HIE L ++ AE
Sbjct: 253 TLDKDQGISVLTDAIKACTAEIEKHKGKLIVKEAPRAVSEREDKLFN-EHIETLNEQNAE 311

Query: 310 VDG 318
           VDG
Sbjct: 312 VDG 314


>01_06_1132 -
           34769800-34769955,34770098-34770157,34770259-34770334,
           34770412-34770533,34770634-34770708,34770899-34771025,
           34771126-34771214,34773479-34773535,34773584-34773661
          Length = 279

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 100 ICISGLFHNSVSIDYDSWLN 159
           + IS LFH+++ ID +SWL+
Sbjct: 93  VVISDLFHSNIIIDRNSWLS 112


>10_08_0352 + 17091637-17091945,17092049-17096617,17096975-17097187,
            17097266-17097494,17097857-17097981
          Length = 1814

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 211  GSISLKSMR-AGTSIIDQIQFSKQHIEE--LKRLAEVDGFYTLKSTVTSTENNK 363
            GS S++  R A  S+ D  +     IE   + R AE+DGF++ K   T T  ++
Sbjct: 1042 GSASIRESRDAERSVADSDKVDDASIESRNVDRDAEIDGFFSSKLVETGTARSE 1095


>06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255
          Length = 863

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 370 EFLSSMKAIAFLDSGFSDTINSWV 441
           E L  +KA+ +L   FSDT  SW+
Sbjct: 746 EMLGDLKALEYLALPFSDTQGSWL 769


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,589,303
Number of Sequences: 37544
Number of extensions: 189349
Number of successful extensions: 428
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)