Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I20
(457 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46871| Best HMM Match : PAN (HMM E-Value=1) 30 1.0
SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24) 29 1.8
SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29) 29 2.4
SB_39693| Best HMM Match : His_kinase (HMM E-Value=7) 28 3.2
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_8536| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_18511| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0) 27 7.4
>SB_46871| Best HMM Match : PAN (HMM E-Value=1)
Length = 525
Score = 29.9 bits (64), Expect = 1.0
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 94 IFICISGLFHNSVSIDYDSWL-NIKIEHTLNCNGEKYCHRGSISLKSMRAGTSIIDQIQF 270
+ + ISG ++ ++ S L N I+ T C EK+CH ++ L ++G + + I
Sbjct: 46 LLVPISGANTSNETVTQKSLLANDIIDCTFECLAEKWCHSLNVKLTLTKSGQHVCELIVT 105
Query: 271 SKQHIEE 291
K + E
Sbjct: 106 DKYNHSE 112
>SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)
Length = 1669
Score = 29.1 bits (62), Expect = 1.8
Identities = 21/88 (23%), Positives = 33/88 (37%)
Frame = +1
Query: 100 ICISGLFHNSVSIDYDSWLNIKIEHTLNCNGEKYCHRGSISLKSMRAGTSIIDQIQFSKQ 279
I + G H +S D++S N K+E + G K + I S +
Sbjct: 422 IVLEGTRHKDMSTDFESSHNTKVEKS-QLEGGKKGRKSGIKKSKSEVNESNTSRKSIRGN 480
Query: 280 HIEELKRLAEVDGFYTLKSTVTSTENNK 363
+ + ++E D T ST NNK
Sbjct: 481 KSQNVSAVSETDTTEPETRTRRSTRNNK 508
>SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)
Length = 1123
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 159 IKPTIVVDTDRIMK*TTNTYKNRNISMH 76
++PTIV+DT R NTY+ R++S +
Sbjct: 904 LQPTIVLDTARAFYPLNNTYQARDVSRY 931
>SB_39693| Best HMM Match : His_kinase (HMM E-Value=7)
Length = 272
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 121 HNSVSIDYDSWLNIKIEHTLNCNGEKYCHRGSISLKSMRAGTSIIDQIQFSKQH 282
H + D + W+ I I H L+ G+K R +S++ +S++ + H
Sbjct: 105 HFQTTFDKERWMFILIAHRLSKRGKKKVERFGRLTRSLKRCSSVVSSLTLPLIH 158
>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1798
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 235 RAGTSIIDQIQFSKQHIEELKRLAEVDGFYTLKSTVTSTENNK 363
RA S + + FSK+ E +AE DG TL + T ++
Sbjct: 1098 RAAASCLRNVSFSKERDENKLAIAECDGIETLLRLLQRTPKDE 1140
>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1822
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 28 IKNIFFQVKSTNCVLKMHRYISIFICISGLFHNSVSIDYDSWLNIKIEHTLNCNGEK 198
IK I + KST K+ R + + IS L H +V Y+SW+ + E ++ N ++
Sbjct: 612 IKRIPWNPKSTALNRKITREVQL---ISRLNHENVVRYYNSWIEMADEEDVSSNSDE 665
>SB_8536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1029
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 379 SSMKAIAFLDSGFSDTINSWVLPNGA 456
S K F+DSGF DT+ SWV G+
Sbjct: 517 SGFKVTFFMDSGFRDTL-SWVEKEGS 541
>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1462
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 365 PLLFSVDVTVDFRV*NPSTSASLFNSSICCFENCIWSMIDVPALILFSEMLPRWQYFSPL 186
PLLF V + + +P TS SLF C+ I S D L ++L W L
Sbjct: 718 PLLFLVYINDLPALLDPGTSLSLFADDTKCYRT-ISSPSDAVKLQSDLDVLSEWSRAWKL 776
Query: 185 QFNV 174
++N+
Sbjct: 777 RYNI 780
>SB_18511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 80 IDIFLFLYVLVVYFIIRS 133
+DI L LYV ++YFI+R+
Sbjct: 123 LDILLGLYVFILYFILRN 140
>SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 943
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 365 PLLFSVDVTVDFRV*NPSTSASLFNSSICCFENCIWSMIDVPALILFSEMLPRWQYFSPL 186
PLLF V + + +P TS SLF C+ I S D L ++L W L
Sbjct: 309 PLLFLVYINDLPALLDPGTSLSLFADDTKCYRT-ISSPSDAVKLQSDLDVLSEWSRAWKL 367
Query: 185 QFNV 174
++N+
Sbjct: 368 RYNI 371
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,803,385
Number of Sequences: 59808
Number of extensions: 238185
Number of successful extensions: 423
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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