Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I19
         (392 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8REP5 Cluster: Putative uncharacterized protein FN1053...    33   2.6  
UniRef50_Q6FY07 Cluster: Similar to sp|Q92325 Saccharomyces cere...    31   6.0  

>UniRef50_Q8REP5 Cluster: Putative uncharacterized protein FN1053;
           n=3; Fusobacterium nucleatum|Rep: Putative
           uncharacterized protein FN1053 - Fusobacterium nucleatum
           subsp. nucleatum
          Length = 182

 Score = 32.7 bits (71), Expect = 2.6
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +1

Query: 37  LYPYKFET--LNSPSRVYNFEKLLYTCSFISN*KQV*SVHSYFTFSH 171
           L PY+FE+  LN  ++ +NFEK LY+  ++   K + +   Y+ F+H
Sbjct: 76  LSPYEFESTQLNYVNKSFNFEKYLYSGDYV---KVIKAFKDYYGFTH 119


>UniRef50_Q6FY07 Cluster: Similar to sp|Q92325 Saccharomyces
           cerevisiae YOL025w LAG2; n=1; Candida glabrata|Rep:
           Similar to sp|Q92325 Saccharomyces cerevisiae YOL025w
           LAG2 - Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 690

 Score = 31.5 bits (68), Expect = 6.0
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 293 SDRSILILTRLSNLI-QIVNSIKSWRIINIKHGNTIFRTT 177
           SD SIL+L R+ N++  I+ SI+S  +IN  H N    TT
Sbjct: 309 SDLSILLLDRVLNILTNIIPSIESRDVINKHHNNNDLVTT 348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 353,380,174
Number of Sequences: 1657284
Number of extensions: 6061785
Number of successful extensions: 13009
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13004
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16080341554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)