Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I19
         (392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0683 - 26703486-26703539,26703639-26703797                       28   2.3  
02_05_0567 + 30029862-30030136,30030299-30030384,30031663-300318...    27   7.1  

>03_05_0683 - 26703486-26703539,26703639-26703797
          Length = 70

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 272 KLK*TDQKHELSQQKKLRSSWSLW 343
           +L  T QK E +Q+KK +S W++W
Sbjct: 10  RLHITKQKREDNQRKKNQSKWNIW 33


>02_05_0567 +
           30029862-30030136,30030299-30030384,30031663-30031811,
           30032581-30032685,30032779-30032895,30033251-30033394,
           30033519-30033668
          Length = 341

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 65  IHPLGCTILKNSYIRVHLFLTRSKYSPFTVILPLAIEL 178
           +  +GC+I +       L   R K SPF  +LP ++ L
Sbjct: 80  VEQVGCSIQRLLRYLAELLAERHKLSPFIPVLPNSVRL 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,616,946
Number of Sequences: 37544
Number of extensions: 134496
Number of successful extensions: 236
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)