Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I19
         (392 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9414| Best HMM Match : 7tm_1 (HMM E-Value=0.051)                    26   9.5  

>SB_9414| Best HMM Match : 7tm_1 (HMM E-Value=0.051)
          Length = 334

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = -1

Query: 353 IDHTKVTRSYGVSFAVITH--VSDRSILILTRLSNLIQIVNSIKSWRIINIKHGNTIFRT 180
           ++H   T    +  AVI     S  S+  L  ++    +  S   W ++N     T+F T
Sbjct: 89  MEHRIHTELISLQIAVIISFVASMSSVFCLVGITICRYLFASAPDWFVVNATFNRTLFAT 148

Query: 179 TTQWL 165
           +  WL
Sbjct: 149 SMGWL 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,843,911
Number of Sequences: 59808
Number of extensions: 188468
Number of successful extensions: 385
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)