Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I19
         (392 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-12|CAA83006.2|  486|Caenorhabditis elegans Hypothetical p...    29   1.6  
AF031935-1|AAB87066.1|  486|Caenorhabditis elegans UNC-47 protein.     29   1.6  
Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical pr...    27   6.3  

>Z30423-12|CAA83006.2|  486|Caenorhabditis elegans Hypothetical
           protein T20G5.6 protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = +1

Query: 16  FILIVFELYPYKFETLNSPSRVYNFEKLLYTCSFISN*KQV*SVHSYFTFSH*VVVLNIV 195
           ++++  +L    F +++    +      L TCSF+ + + V  +  +   SH +V L +V
Sbjct: 184 YLVLAADLLQSCFPSVDKAGWMMITSASLLTCSFLDDLQIVSRLSFFNAISHLIVNLIMV 243

Query: 196 LPCLIFI 216
           L CL F+
Sbjct: 244 LYCLSFV 250


>AF031935-1|AAB87066.1|  486|Caenorhabditis elegans UNC-47 protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = +1

Query: 16  FILIVFELYPYKFETLNSPSRVYNFEKLLYTCSFISN*KQV*SVHSYFTFSH*VVVLNIV 195
           ++++  +L    F +++    +      L TCSF+ + + V  +  +   SH +V L +V
Sbjct: 184 YLVLAADLLQSCFPSVDKAGWMMITSASLLTCSFLDDLQIVSRLSFFNAISHLIVNLIMV 243

Query: 196 LPCLIFI 216
           L CL F+
Sbjct: 244 LYCLSFV 250


>Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical
           protein F22B8.1 protein.
          Length = 359

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 284 SILILTRLSNLIQIVNSIKSWRII-NIKHGNTIFRTTTQWLK 162
           +ILILT LS +  ++NSI S  II  +K  N     TT+ L+
Sbjct: 213 AILILTTLSVISLVINSIFSILIITKLKSENLSMSNTTKRLQ 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,353,614
Number of Sequences: 27780
Number of extensions: 151886
Number of successful extensions: 315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)