Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I18
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    32   0.029
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    32   0.029
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    28   0.63 
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   0.84 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   1.5  
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    26   1.9  
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    26   2.6  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    26   2.6  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    25   4.5  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   4.5  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   4.5  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.9  
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    25   5.9  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    25   5.9  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    25   5.9  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    24   7.8  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    24   7.8  

>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 32.3 bits (70), Expect = 0.029
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 315 DNFIITGGLDDVIKVWQLDNGKLELRHQLE 404
           D+FI TG +D  +++W LDN  L   + +E
Sbjct: 384 DSFIATGSMDTTVRLWNLDNDVLHKDNPVE 413


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 32.3 bits (70), Expect = 0.029
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 306 GNVDNFIITGGLDDVIKVWQLDNGKL 383
           G  D F+++G  DD I++W  ++GKL
Sbjct: 437 GKDDTFVLSGSEDDKIRIWHRESGKL 462


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 27.9 bits (59), Expect = 0.63
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 318 NFIITGGLDDVIKVWQL 368
           N  +TGG D ++KVW L
Sbjct: 559 NLFVTGGSDGIVKVWDL 575



 Score = 25.0 bits (52), Expect = 4.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 321 FIITGGLDDVIKVWQLD 371
           F+ TG  D+ +KVW ++
Sbjct: 313 FLYTGAFDNAVKVWDME 329


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 315 DNFIITGGLDDVIKVWQLDNGKLE 386
           D FI  G LD +I+VW +    +E
Sbjct: 455 DQFIAVGSLDQIIRVWSVSGTLVE 478



 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 285 DSNHSGTGNVDNFIITGGLDDVIKVWQLDNGKLELRHQLE 404
           D +H+G      FI++G  D   ++W ++ G+  L+ ++E
Sbjct: 409 DFSHNG-----RFIVSGSGDRTARLWDVETGQCILKLEIE 443



 Score = 24.6 bits (51), Expect = 5.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 318 NFIITGGLDDVIKVWQL 368
           + +++G LD  IKVW+L
Sbjct: 497 SILLSGSLDKTIKVWEL 513


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 92   EPQRCYYSTLNYIEKYTNSINL 27
            EPQ  Y S+ NY E ++N I L
Sbjct: 1781 EPQEQYLSSSNYAELFSNQIQL 1802


>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 315 DNFIITGGLDDVIKVWQLDNGK 380
           D  ++TG +D  I++W L  GK
Sbjct: 301 DPQVVTGSMDSTIRLWDLAAGK 322



 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 315 DNFIITGGLDDVIKVWQLDNGKLEL 389
           + +  TG  D  IK+W L +G L+L
Sbjct: 175 NQWFCTGAGDRTIKIWDLASGVLKL 199


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +3

Query: 309 NVDNF-IITGGLDDVIKVWQLDNGKLELRH 395
           N DN   ++ G D  +KVW L+   L   H
Sbjct: 159 NPDNLTFVSAGWDKAVKVWDLETFSLRTSH 188


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 315 DNFIITGGLDDVIKVWQLDNGK 380
           D  I++GG D  +++W  + G+
Sbjct: 439 DEKIVSGGYDGTVRIWNFNTGE 460



 Score = 24.2 bits (50), Expect = 7.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 315 DNFIITGGLDDVIKVWQLD 371
           +N+II+   D   +VW+LD
Sbjct: 313 ENYIISSSRDHTARVWRLD 331


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 324 IITGGLDDVIKVWQLDN 374
           +  GG+D  IK+W L N
Sbjct: 192 VFIGGIDGAIKIWDLRN 208


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 324 IITGGLDDVIKVWQLDNG 377
           IITG  D  IKVW +++G
Sbjct: 354 IITGADDGKIKVWDMNSG 371


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +3

Query: 318 NFIITGGLDDVIKVWQLDNGK 380
           N++ +GG D V+++W++  G+
Sbjct: 392 NWLASGGDDGVLRIWEVMTGR 412


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -1

Query: 249 CYSLFLYGSNRNTK*NRHVRFLFSIVNNTMLLST*FIILSLARKCSF 109
           CYS+    SNR     R   F FS  + T+ +   FII   A KC F
Sbjct: 35  CYSIEKLKSNRILIAVRLFSFAFSSFSTTLRILRDFII--AASKCEF 79


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 309 NVDNFIITGGLDDVIKVW 362
           +V +F+ TG  D V+K+W
Sbjct: 394 SVPSFVATGSTDRVVKLW 411


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 318 NFIITGGLDDVIKVWQL 368
           N  +TGG D + K+W L
Sbjct: 161 NLFVTGGCDKLAKLWDL 177


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 FIITGGLDDVIKVWQLDNG 377
           +I TGG+D  +++W+   G
Sbjct: 118 YIATGGMDSQVRLWKSSTG 136


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 312 VDNFIITGGLDDVIKVWQLDNGK 380
           V + ++TG  D  ++VW L  G+
Sbjct: 455 VGDTLVTGSTDRTVRVWDLRTGE 477


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 324 IITGGLDDVIKVWQLD 371
           I TGGLD  I++W  +
Sbjct: 33  IATGGLDGTIRIWSTE 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,445,892
Number of Sequences: 5004
Number of extensions: 22740
Number of successful extensions: 116
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)