Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I18
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 32 0.15
07_01_0972 - 8176013-8176960 31 0.26
12_01_0471 - 3672309-3672740,3673159-3673251,3673271-3673399,367... 31 0.35
03_06_0560 + 34726338-34727243 31 0.35
04_04_1180 - 31519713-31521419,31522308-31522533,31524097-31524215 31 0.46
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504... 30 0.80
10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838... 29 1.4
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 29 1.8
01_07_0014 - 40455673-40455723,40455815-40455892,40455987-404560... 28 2.4
11_06_0627 + 25633537-25633884,25635246-25635869 23 3.1
08_02_1111 + 24377268-24377444,24377543-24377630,24378072-243781... 28 3.2
10_01_0025 - 328105-328188,328281-328337,328680-328734,328809-32... 27 4.3
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851... 27 5.6
02_01_0283 + 1903869-1904786 27 5.6
04_04_0193 + 23482177-23484963 26 9.9
03_02_0939 + 12571052-12571173,12571219-12571309,12571413-125715... 26 9.9
02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,762... 26 9.9
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 26 9.9
01_01_0742 + 5759505-5759639,5760497-5760593,5760694-5760755,576... 26 9.9
>01_06_0923 +
33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 32.3 bits (70), Expect = 0.15
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 321 FIITGGLDDVIKVWQLDNGKL 383
+++TGG D+++KVW L GKL
Sbjct: 254 WVVTGGEDNIVKVWDLTAGKL 274
>07_01_0972 - 8176013-8176960
Length = 315
Score = 31.5 bits (68), Expect = 0.26
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 297 SGTGNVDNFIITGGLDDVIKVWQLDNGKLELRHQL 401
+G+G + +++GG D V+KVW NG +L L
Sbjct: 169 AGSGELVYKLVSGGFDSVVKVWGFVNGGWKLESAL 203
>12_01_0471 -
3672309-3672740,3673159-3673251,3673271-3673399,
3673400-3673448,3674291-3674378,3674477-3674573,
3675195-3675278,3675377-3675464,3676589-3676715,
3676774-3676848,3676934-3677042,3677125-3677448,
3677863-3678039
Length = 623
Score = 31.1 bits (67), Expect = 0.35
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = +3
Query: 321 FIITGGLDDVIKVWQLDNGKL 383
+++TGG DD+++VW +D+ K+
Sbjct: 395 YLLTGGEDDLVQVWSMDDRKI 415
>03_06_0560 + 34726338-34727243
Length = 301
Score = 31.1 bits (67), Expect = 0.35
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 300 GTGNVDNFIITGGLDDVIKVWQLDNGKLEL 389
G+G + +++GG D V+KVW NG +L
Sbjct: 170 GSGELVQKLVSGGFDCVVKVWAFVNGSWKL 199
>04_04_1180 - 31519713-31521419,31522308-31522533,31524097-31524215
Length = 683
Score = 30.7 bits (66), Expect = 0.46
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 318 NFIITGGLDDVIKVWQLDNGKL 383
N I TGG D VI++W L+ G L
Sbjct: 313 NLIFTGGNDSVIRMWDLEEGLL 334
>04_04_1592 -
34649484-34649547,34650118-34650186,34650325-34650444,
34650630-34650742,34650824-34650898,34651224-34651346,
34651427-34651446,34652354-34652410,34652922-34653860,
34653961-34654189,34654296-34654439,34654527-34654601,
34655363-34655433,34656103-34656205,34656407-34656633,
34656791-34656908,34657239-34657369,34657709-34657802
Length = 923
Score = 29.9 bits (64), Expect = 0.80
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 321 FIITGGLDDVIKVWQLDNGKL 383
++++GG D+V+K+W L GKL
Sbjct: 179 WVVSGGEDNVVKLWDLTAGKL 199
>10_08_0491 -
18283404-18283482,18283590-18283658,18283767-18283883,
18283953-18284068,18284149-18284223,18284248-18284430,
18284530-18284591,18284668-18285606,18285723-18285846,
18285917-18286060,18286151-18286225,18286359-18286382,
18287025-18287095,18287305-18287407,18287555-18287781,
18287910-18288027,18288220-18288311,18288793-18288874
Length = 899
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 321 FIITGGLDDVIKVWQLDNGKL 383
+I++GG D+ +K+W L GKL
Sbjct: 162 WIVSGGSDNSVKIWDLTAGKL 182
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 315 DNFIITGGLDDVIKVWQLDNGKL 383
D I TG D +IKVW+ GKL
Sbjct: 276 DGLIYTGSEDCLIKVWETSQGKL 298
>01_07_0014 -
40455673-40455723,40455815-40455892,40455987-40456049,
40456250-40456390,40456851-40456949,40457403-40457477,
40457556-40457652,40457738-40457805,40458456-40458512,
40458613-40458671,40458798-40458921,40459208-40459264,
40459378-40459457,40459585-40459793,40459868-40459986
Length = 458
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 285 DSNHSGTGNVDNFIITGGLDDVIKVWQLD 371
D N G G+ NF+ G +D I++W LD
Sbjct: 188 DFNLKG-GDKGNFVAVGTMDPAIEIWDLD 215
>11_06_0627 + 25633537-25633884,25635246-25635869
Length = 323
Score = 23.4 bits (48), Expect(2) = 3.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +3
Query: 186 ENAHDDSIWCCGW 224
+ AH++SIW W
Sbjct: 10 DGAHEESIWAAAW 22
Score = 23.0 bits (47), Expect(2) = 3.1
Identities = 6/17 (35%), Positives = 13/17 (76%)
Frame = +3
Query: 324 IITGGLDDVIKVWQLDN 374
++TG LD+ +++W D+
Sbjct: 34 LLTGALDETVRLWAPDD 50
>08_02_1111 +
24377268-24377444,24377543-24377630,24378072-24378157,
24378358-24378511,24378723-24378883,24378964-24379632,
24379860-24380058,24380188-24380405,24380578-24380755,
24380859-24381358
Length = 809
Score = 27.9 bits (59), Expect = 3.2
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 318 NFIITGGLDDVIKVWQLDNGKLELRHQLE 404
+++++G D +I W++D+GK E L+
Sbjct: 95 HYLLSGSSDGIIMAWKIDSGKGEWTRALQ 123
>10_01_0025 -
328105-328188,328281-328337,328680-328734,328809-328951,
330772-330909,331010-331120,332621-332684,334179-334378,
334678-334805,335468-335593,335828-335917,336035-336116,
336845-336910
Length = 447
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 315 DNFIITGGLDDVIKVWQLDNGKL 383
D I TG D IKVW+ GKL
Sbjct: 225 DGLIYTGSEDCSIKVWETSQGKL 247
>07_01_1005 +
8509777-8509968,8510059-8510205,8510326-8510544,
8510652-8510761,8511337-8511391,8511447-8511631,
8512537-8512599,8513713-8513782,8514159-8514242,
8515925-8516159,8516213-8516517
Length = 554
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 165 YYLQLKKENAHDDSIWCCGW 224
Y L LKKE AHD I C W
Sbjct: 353 YRLILKKEKAHDMDINCVRW 372
>02_01_0283 + 1903869-1904786
Length = 305
Score = 27.1 bits (57), Expect = 5.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 324 IITGGLDDVIKVWQLDNG 377
+ +GG D+ +KVW+L NG
Sbjct: 182 LASGGCDNTVKVWKLYNG 199
>04_04_0193 + 23482177-23484963
Length = 928
Score = 26.2 bits (55), Expect = 9.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 297 SGTGNVDNFIITGGLDDVIKVWQLDNGKLELRHQL 401
SG N++N IITGG + W LD +R+++
Sbjct: 724 SGCCNLENVIITGGEYKGEQPWSLDRTVSMMRYRV 758
>03_02_0939 +
12571052-12571173,12571219-12571309,12571413-12571512,
12571726-12571807,12571897-12571953,12572632-12572713,
12572792-12572884,12573984-12574047,12574161-12574246,
12574329-12574430,12574526-12574609,12574885-12574945,
12575010-12575091,12575173-12575250,12575867-12575931,
12576108-12576185,12576278-12576450
Length = 499
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 315 DNFIITGGLDDVIKVWQLDNGKLEL 389
+ + TG D IK+W L +G L+L
Sbjct: 196 NEWFCTGSADRTIKIWDLASGTLKL 220
>02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,
7622466-7622516,7622936-7623070,7623161-7623184,
7623341-7623452,7623776-7623901,7624004-7624053,
7624339-7624497,7624582-7624677,7624751-7624866,
7624907-7624984,7624985-7625108,7625193-7625306,
7625423-7625503,7625616-7625756,7625834-7625848
Length = 1397
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 300 GTGNVDNFIITGGLDDVI 353
GTGN+ I+ G LDDV+
Sbjct: 1030 GTGNLSGKIVWGALDDVV 1047
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 26.2 bits (55), Expect = 9.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 174 QLKKENAHDDSIWCCGW 224
Q++ NAHD+S+W W
Sbjct: 388 QIEINNAHDNSVWDLAW 404
>01_01_0742 +
5759505-5759639,5760497-5760593,5760694-5760755,
5760842-5760898,5761062-5761118,5761501-5761534,
5761788-5761822,5761956-5762046,5762312-5762633,
5762710-5762845,5763031-5763120
Length = 371
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 297 SGTGNVDNFIITGGLDDVIKVWQLDNG 377
S G F+++GG D IK+W G
Sbjct: 300 SAFGEKGKFLVSGGNDSSIKLWDWSKG 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,407,899
Number of Sequences: 37544
Number of extensions: 123284
Number of successful extensions: 375
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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