Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I18
         (405 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.038
SB_9638| Best HMM Match : WD40 (HMM E-Value=8.4e-09)                   34   0.038
SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.)                26   0.31 
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.82 
SB_56394| Best HMM Match : WD40 (HMM E-Value=6.2e-10)                  29   1.4  
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_5480| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.5  
SB_41590| Best HMM Match : WD40 (HMM E-Value=6.5e-13)                  28   3.3  
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.3  
SB_57042| Best HMM Match : WD40 (HMM E-Value=4.9e-09)                  28   3.3  
SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_36541| Best HMM Match : WD40 (HMM E-Value=0)                        27   4.4  
SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39)                  27   4.4  
SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)                  27   7.7  

>SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 34.3 bits (75), Expect = 0.038
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 315 DNFIITGGLDDVIKVWQLDNGKLELRHQLE 404
           DNF++TG  D ++KV+ L  G+  LR  +E
Sbjct: 136 DNFLVTGSSDSMVKVYDLSTGRCTLRLTME 165


>SB_9638| Best HMM Match : WD40 (HMM E-Value=8.4e-09)
          Length = 781

 Score = 34.3 bits (75), Expect = 0.038
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 315 DNFIITGGLDDVIKVWQLDNGKLELRHQLE 404
           DNF++TG  D ++KV+ L  G+  LR  +E
Sbjct: 40  DNFLVTGSSDSMVKVYDLSTGRCTLRLTME 69


>SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 25.8 bits (54), Expect(2) = 0.31
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 186 ENAHDDSIWCCGW 224
           E+AH+DSIW   W
Sbjct: 3   EHAHEDSIWTVAW 15



 Score = 24.2 bits (50), Expect(2) = 0.31
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 324 IITGGLDDVIKVWQ 365
           I+TG +DD++K W+
Sbjct: 26  ILTGSVDDMVKCWR 39


>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1110

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 288 NLENFRYFHFHLLCYSLFL 232
           N++N  YF+FHL+C  LF+
Sbjct: 680 NVKNDEYFYFHLICECLFI 698


>SB_56394| Best HMM Match : WD40 (HMM E-Value=6.2e-10)
          Length = 183

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 318 NFIITGGLDDVIKVWQLDNGKLELRHQL 401
           N  +T   DD + +W  DNG   +RHQL
Sbjct: 11  NLCVTAADDDPLTIWNTDNG--SIRHQL 36


>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1649

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 324 IITGGLDDVIKVWQLDNGKLELRHQLE 404
           IITGG D  I+VW  + GK EL   L+
Sbjct: 721 IITGGADGSIRVWDYETGK-ELNKLLD 746



 Score = 27.9 bits (59), Expect = 3.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 315 DNFIITGGLDDVIKVWQLDNGK 380
           D F I+G  D ++K+W L++ K
Sbjct: 886 DKFAISGSEDTMVKIWDLESAK 907


>SB_5480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 315 DNFIITGGLDDVIKVWQLDNGKLELRH 395
           DN +I+GG D+ I VW+L N + E  H
Sbjct: 256 DNVLISGGNDEHIIVWKLWNRQSENGH 282


>SB_41590| Best HMM Match : WD40 (HMM E-Value=6.5e-13)
          Length = 242

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 324 IITGGLDDVIKVWQLDNGK-LELRHQLE 404
           ++TG  D  +K+W  +NG  L + HQ++
Sbjct: 46  LVTGARDGSVKIWNFNNGACLRVLHQVD 73


>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 321 FIITGGLDDVIKVWQLDNGKL--ELRHQLE 404
           +++TG +D  I+VW    GK+  +L++Q +
Sbjct: 228 YLVTGSVDGFIEVWNFTTGKIRKDLKYQAQ 257


>SB_57042| Best HMM Match : WD40 (HMM E-Value=4.9e-09)
          Length = 707

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 312 VDNFIITGGLDDVIKVWQLDNGKLE 386
           +D+F++ G  D  + VWQ++ G L+
Sbjct: 516 LDDFLVVGCSDGSVYVWQMETGHLD 540


>SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 315 DNFIITGGLDDVIKVWQLD 371
           + +I TGG D V+KVW  D
Sbjct: 402 NTWIFTGGFDKVVKVWSQD 420


>SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1167

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 321 SYQHFQFQSGLNLENFRYFHFHLLCYSLFLYGSNRNT 211
           SY H QF+  L +  ++YF   L   S   YG    T
Sbjct: 503 SYSHLQFEKDLEVNTYKYFSDALENLSRAFYGQLTTT 539


>SB_36541| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1070

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 315 DNFIITGGLDDVIKVWQLDN 374
           D FI+T G D +I +W  +N
Sbjct: 226 DKFIVTSGGDSLINIWNTEN 245


>SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39)
          Length = 574

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 327 ITGGLDDVIKVWQLDNGKL 383
           +TGG D ++KVW  D G++
Sbjct: 505 VTGGADKLLKVWDYDAGQV 523


>SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)
          Length = 584

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 321 FIITGGLDDVIKVWQLDNGKLELRHQ 398
           +++TGG DD+I VW     ++  R Q
Sbjct: 330 YVVTGGEDDLITVWSFHELRVIARGQ 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,209,789
Number of Sequences: 59808
Number of extensions: 154557
Number of successful extensions: 363
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)