Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I18
(405 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 34 0.041
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 34 0.041
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 27 0.066
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 31 0.22
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 31 0.22
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 31 0.22
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 31 0.22
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 31 0.39
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 31 0.39
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea... 30 0.68
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 29 0.89
At2g18900.1 68415.m02205 transducin family protein / WD-40 repea... 29 0.89
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 29 1.2
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea... 29 1.6
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea... 28 2.1
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 28 2.1
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 28 2.7
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 27 3.6
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 27 3.6
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 27 3.6
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 27 4.8
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 27 6.3
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 27 6.3
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 27 6.3
At5g49070.1 68418.m06072 beta-ketoacyl-CoA synthase family prote... 26 8.3
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 26 8.3
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 26 8.3
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 26 8.3
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 26 8.3
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 26 8.3
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 33.9 bits (74), Expect = 0.041
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 321 FIITGGLDDVIKVWQLDNGKL 383
++++GGLD+V+KVW L GKL
Sbjct: 156 WVVSGGLDNVVKVWDLTAGKL 176
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 33.9 bits (74), Expect = 0.041
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 321 FIITGGLDDVIKVWQLDNGKL 383
++++GGLD+V+KVW L GKL
Sbjct: 105 WVVSGGLDNVVKVWDLTAGKL 125
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 27.5 bits (58), Expect(2) = 0.066
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 186 ENAHDDSIWCCGW 224
ENAH+DS+W W
Sbjct: 10 ENAHEDSVWAATW 22
Score = 24.6 bits (51), Expect(2) = 0.066
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +3
Query: 324 IITGGLDDVIKVWQLD 371
++TG LD+ +K+W+ D
Sbjct: 33 LLTGSLDETVKLWRPD 48
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 31.5 bits (68), Expect = 0.22
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 321 FIITGGLDDVIKVWQLDNGKL 383
+I++GG D+V+KVW L GKL
Sbjct: 250 WIVSGGEDNVVKVWDLTAGKL 270
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 31.5 bits (68), Expect = 0.22
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 291 NHSGTGNVDNFIITGGLDDVIKVWQLDNGKL 383
N + G ++ I++GG D VI++W + GKL
Sbjct: 152 NRAVWGPLNQTIVSGGEDKVIRIWDAETGKL 182
Score = 24.2 bits (50), Expect(2) = 2.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 324 IITGGLDDVIKVWQLDNGK 380
+ITG D K+W + +GK
Sbjct: 67 LITGSADQTAKLWDVKSGK 85
Score = 22.6 bits (46), Expect(2) = 2.0
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +3
Query: 195 HDDSIWCCGWSR 230
H+ ++WCC SR
Sbjct: 51 HNGAVWCCDVSR 62
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 31.5 bits (68), Expect = 0.22
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 291 NHSGTGNVDNFIITGGLDDVIKVWQLDNGKL 383
N + G ++ I++GG D VI++W + GKL
Sbjct: 152 NRAVWGPLNQTIVSGGEDKVIRIWDAETGKL 182
Score = 24.2 bits (50), Expect(2) = 2.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 324 IITGGLDDVIKVWQLDNGK 380
+ITG D K+W + +GK
Sbjct: 67 LITGSADQTAKLWDVKSGK 85
Score = 22.6 bits (46), Expect(2) = 2.0
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +3
Query: 195 HDDSIWCCGWSR 230
H+ ++WCC SR
Sbjct: 51 HNGAVWCCDVSR 62
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 31.5 bits (68), Expect = 0.22
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 291 NHSGTGNVDNFIITGGLDDVIKVWQLDNGKL 383
N + G ++ I++GG D VI++W + GKL
Sbjct: 152 NRAVWGPLNQTIVSGGEDKVIRIWDAETGKL 182
Score = 24.2 bits (50), Expect(2) = 2.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 324 IITGGLDDVIKVWQLDNGK 380
+ITG D K+W + +GK
Sbjct: 67 LITGSADQTAKLWDVKSGK 85
Score = 22.6 bits (46), Expect(2) = 2.0
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +3
Query: 195 HDDSIWCCGWSR 230
H+ ++WCC SR
Sbjct: 51 HNGAVWCCDVSR 62
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 30.7 bits (66), Expect = 0.39
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 321 FIITGGLDDVIKVWQLDNGKL 383
++++GG D+++KVW L GKL
Sbjct: 157 WVVSGGEDNIVKVWDLTAGKL 177
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 30.7 bits (66), Expect = 0.39
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 321 FIITGGLDDVIKVWQLDNGKL 383
++++GG D+++KVW L GKL
Sbjct: 157 WVVSGGEDNIVKVWDLTAGKL 177
>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 558
Score = 29.9 bits (64), Expect = 0.68
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = +3
Query: 321 FIITGGLDDVIKVWQLDNGKL 383
+I+TGG DD+++VW +++ K+
Sbjct: 359 YILTGGEDDLVQVWSMEDRKV 379
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 29.5 bits (63), Expect = 0.89
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 291 NHSGTGNVDNFIITGGLDDVIKVWQLDNGKL 383
N + G ++ I++GG D I++W + GKL
Sbjct: 179 NRAVWGPLNQTIVSGGEDAAIRIWDAETGKL 209
Score = 24.2 bits (50), Expect(2) = 2.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 324 IITGGLDDVIKVWQLDNGK 380
+ITG D K+W + +GK
Sbjct: 94 LITGSADQTAKLWDVKSGK 112
Score = 22.2 bits (45), Expect(2) = 2.6
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = +3
Query: 195 HDDSIWCCGWSR 230
H ++WCC SR
Sbjct: 78 HSGAVWCCDISR 89
>At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to LACK protective antigen (GI:13625467)
[Leishmania donovani]
Length = 804
Score = 29.5 bits (63), Expect = 0.89
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Frame = +3
Query: 294 HSGTGNVDNF------IITGGLDDVIKVWQLDNGK 380
HS NV NF + +GG + V+ VWQLD GK
Sbjct: 282 HSAEVNVLNFSSDGAYLYSGGREGVLVVWQLDTGK 316
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 29.1 bits (62), Expect = 1.2
Identities = 8/21 (38%), Positives = 18/21 (85%)
Frame = +3
Query: 321 FIITGGLDDVIKVWQLDNGKL 383
+++TGG DD+++VW +++ K+
Sbjct: 359 YLLTGGEDDLVQVWSMEDRKV 379
>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
family protein similar to PAK/PLC-interacting protein 1
(GI:4211689) {Homo sapiens}
Length = 1115
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 324 IITGGLDDVIKVWQLDNGKLE 386
+++G D I+VWQ+ GKLE
Sbjct: 910 VLSGSADKTIRVWQIVKGKLE 930
>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to photomorphogenesis repressor PnCOP1
(GI:11127996) [Ipomoea nil]
Length = 385
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 324 IITGGLDDVIKVWQLDNGKLELR 392
I+TG D +K W +DNG+ +R
Sbjct: 270 IVTGSTDGSLKQWDIDNGRRVVR 292
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 285 DSNHSGTGNVDNFIITGGLDDVIKVWQLDNGKLELRHQL 401
D+ ++ D+ + TG D +KVW+ + E++H L
Sbjct: 288 DAVNTVVSGFDDLVFTGSADGTLKVWKREVQGKEMKHVL 326
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 27.9 bits (59), Expect = 2.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 324 IITGGLDDVIKVWQLDNGKLEL 389
+ +GG D+ +KVW+L NG ++
Sbjct: 179 LASGGCDNTVKVWKLANGSWKM 200
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 318 NFIITGGLDDVIKVWQLDN 374
N + +G +D IKVW LDN
Sbjct: 285 NRLYSGSMDKTIKVWSLDN 303
Score = 26.6 bits (56), Expect = 6.3
Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 315 DNFIITGGLDDVIKVW-QLDNGKLELRH 395
D F+++ LD+ +K+W ++ G LE+ +
Sbjct: 324 DQFLLSCSLDNTVKIWAAIEGGNLEVTY 351
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 318 NFIITGGLDDVIKVWQLDN 374
N + +G +D+ IKVW LDN
Sbjct: 278 NRLYSGAMDNSIKVWSLDN 296
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 324 IITGGLDDVIKVWQLDNGK 380
I TGG+D+ +KVW L G+
Sbjct: 195 IFTGGVDNDVKVWDLRKGE 213
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 315 DNFIITGGLDDVIKVWQLDNGKL 383
D I TG D IK+W+ GKL
Sbjct: 252 DGIIYTGSQDCTIKMWETTQGKL 274
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 26.6 bits (56), Expect = 6.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 324 IITGGLDDVIKVWQLDNGKLEL 389
+ +GG D +KVW+ NG ++
Sbjct: 179 LASGGCDSTVKVWKFSNGSWKM 200
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 330 TGGLDDVIKVWQLDNGKLELRHQ 398
T GLD I +W L+N + EL +Q
Sbjct: 355 TSGLDGKIAIWDLENMQQELGNQ 377
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 26.6 bits (56), Expect = 6.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 315 DNFIITGGLDDVIKVWQLDNGKLE 386
+ ++ T D +K+W LD KLE
Sbjct: 229 NKYLATASSDKTVKIWNLDGFKLE 252
>At5g49070.1 68418.m06072 beta-ketoacyl-CoA synthase family protein
similar to very-long-chain fatty acid condensing enzyme
CUT1 [GI:5001734], beta-ketoacyl-CoA synthase
[Simmondsia chinensis][GI:1045614]
Length = 464
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 285 LENFRYFHFHLLCYSLFLYGSN 220
LE F+Y H+LC L +Y SN
Sbjct: 318 LEQFQYVIQHILCKKLKIYESN 339
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 26.2 bits (55), Expect = 8.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 174 QLKKENAHDDSIWCCGWSRI 233
Q++ NAHD+S+W W I
Sbjct: 388 QIEIPNAHDNSVWDLAWHPI 407
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 26.2 bits (55), Expect = 8.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 315 DNFIITGGLDDVIKVWQLDNGKLEL 389
D+ I+T G D +VW +D +LE+
Sbjct: 288 DSLIVTAGEDCTCRVWGVDGTQLEV 312
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 26.2 bits (55), Expect = 8.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 315 DNFIITGGLDDVIKVWQLDNGKLEL 389
D+ I+T G D +VW +D +LE+
Sbjct: 288 DSLIVTAGEDCTCRVWGVDGTQLEV 312
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 26.2 bits (55), Expect = 8.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 330 TGGLDDVIKVWQLDNGKLELRHQ 398
T GLD + +W L+N + EL +Q
Sbjct: 355 TSGLDGKVAIWDLENMEQELGNQ 377
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 26.2 bits (55), Expect = 8.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 330 TGGLDDVIKVWQLDNGKLELRHQ 398
T GLD + +W L+N + EL +Q
Sbjct: 355 TSGLDGKVAIWDLENMEQELGNQ 377
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,159,935
Number of Sequences: 28952
Number of extensions: 108566
Number of successful extensions: 375
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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