Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I17
         (477 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q76FK4 Cluster: Nucleolar protein 8; n=20; Eutheria|Rep...    32   7.5  
UniRef50_Q4Z9W4 Cluster: ORF021; n=4; unclassified Myoviridae|Re...    31   10.0 
UniRef50_Q4UDC7 Cluster: Putative uncharacterized protein; n=2; ...    31   10.0 

>UniRef50_Q76FK4 Cluster: Nucleolar protein 8; n=20; Eutheria|Rep:
           Nucleolar protein 8 - Homo sapiens (Human)
          Length = 1167

 Score = 31.9 bits (69), Expect = 7.5
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 195 LISKTGRILFTNKKSNKQLEKILIYWISMFCESIPNI-DHFQNLIPI 58
           ++SK GR+L      N+   KI+ Y  S +C ++  I + F N IPI
Sbjct: 142 VVSKFGRVLPVLHLKNQHKRKIIKYDPSKYCHNLKKIGEDFSNTIPI 188


>UniRef50_Q4Z9W4 Cluster: ORF021; n=4; unclassified Myoviridae|Rep:
           ORF021 - Staphylococcus phage G1
          Length = 418

 Score = 31.5 bits (68), Expect = 10.0
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -1

Query: 201 YSLISKTGRILFTNKKSNKQLEKILIYWISMFCESIPNI 85
           +S+ S  GR+  T + S +Q+ K L YWI  F E IP +
Sbjct: 115 FSIQSGEGRLKNTVELSVEQVGKELEYWIDTFNEKIPGV 153


>UniRef50_Q4UDC7 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria annulata
          Length = 891

 Score = 31.5 bits (68), Expect = 10.0
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -3

Query: 190 FQNWKNTIYE*KVE*TTRKNTHLLDLDVL*IDSKYRSFSKSYTHPYL 50
           F N+ N  Y   +E  ++K+TH++ L  L I+   R+F  + TH YL
Sbjct: 486 FSNFSNNTYMFYIE--SKKSTHIISLGNLAINIACRAFILAVTHGYL 530


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 445,942,394
Number of Sequences: 1657284
Number of extensions: 7927427
Number of successful extensions: 19896
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19894
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26870548160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)