Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I17
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    29   0.28 
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   1.1  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   1.5  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   5.9  
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    25   7.9  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    25   7.9  

>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
 Frame = -1

Query: 180 GRILFTNKKSNKQLEKILI--YW----ISMFCESIPNIDHFQNLI 64
           G+IL TN    K   KILI   W    ISM+ E + +IDH Q L+
Sbjct: 797 GKILATNDMEIKYKPKILISQIWNAIVISMYREHLLSIDHVQRLL 841


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 22   TSSGRVISRLSRDGYKILKMI 84
            TSSGR+++R S D YK+ +++
Sbjct: 998  TSSGRILNRFSNDVYKVDEVV 1018


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 95  IDSQNIEIQ*MSIFSSCLFDFLFVNSILP 181
           +DS   +I+   + + CLFD+LF++SI P
Sbjct: 345 VDSTFFDIKNTDVLT-CLFDYLFLSSISP 372


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +2

Query: 338 FTDDIHIYIIL*MMP---RWCSCITVRLPF*GLGFD 436
           F D++H+ +   M P    WC+ IT   P  GLG +
Sbjct: 782 FRDEVHLSVFP-MSPVEILWCNMITSSFPSMGLGME 816


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 87  YLESIHKTSRSNR*VFFLVVYST--FYS*IVFFQFWKLDYNHHLLQKLFP 230
           Y+E I  TS      FFL  +    F+   +F+ +W L  N  L+++ FP
Sbjct: 57  YIEPIDNTS------FFLHPFKKIRFWWRYLFYGWWNLKKNQFLIKRTFP 100


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -1

Query: 465 NPIPLDPTRVSNPRPQNGSRTVIQLHHRGIIYNMMYICISSVNRQK*NSSVS 310
           NP+   P  VS+P    G+ TV+    +  +    +   +S  R K + S S
Sbjct: 25  NPVRFRPAVVSSPSVPEGTYTVLNNPKQSTVSRKSFSAPTSPTRNKRSGSSS 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,560
Number of Sequences: 5004
Number of extensions: 36302
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)