Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I17
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0242 + 1804183-1806096                                           29   1.5  
05_03_0416 + 13684604-13688050                                         28   4.5  
10_08_0496 - 18328875-18328907,18329056-18329106,18329562-183296...    27   5.9  

>05_01_0242 + 1804183-1806096
          Length = 637

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 465 NPIPLDPTRVSNPRPQNGSRTVIQLHHRGII 373
           N IP DP+R   PRP  GS    + HH   +
Sbjct: 29  NKIPADPSRTERPRPDPGSGDSAR-HHEATV 58


>05_03_0416 + 13684604-13688050
          Length = 1148

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 129 LIYWISMFCESIPNIDHFQNLIPIP 55
           LIY   M    IPN+ H Q L+ +P
Sbjct: 820 LIYLTRMTLHEIPNLKHMQGLVELP 844


>10_08_0496 -
           18328875-18328907,18329056-18329106,18329562-18329690,
           18330491-18330524,18331252-18331280,18331801-18332945,
           18333003-18333353,18334617-18334893
          Length = 682

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 476 LSSLTQYHLTRPGYRT 429
           + S+TQ+HL+R GYRT
Sbjct: 635 VGSVTQFHLSRGGYRT 650


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,642,634
Number of Sequences: 37544
Number of extensions: 203638
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)