Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I17
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9807| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.00031)            27   6.0  
SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05)           27   7.9  

>SB_9807| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.00031)
          Length = 310

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 305 KNDTELFYFCLFTDDIHIYIIL*MMP 382
           +N+  + Y+ + TDD+HIYI +  +P
Sbjct: 248 RNERIVQYYGIETDDLHIYIFMEYLP 273


>SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05)
          Length = 700

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 10  RGHGTSSGRVISRLSRDGYK 69
           RG G SSG  I  L  DGYK
Sbjct: 247 RGLGVSSGLTIQSLKNDGYK 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,708,427
Number of Sequences: 59808
Number of extensions: 244463
Number of successful extensions: 699
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)