Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I17
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical p...    27   9.2  

>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
            F42C5.10 protein.
          Length = 1292

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 442  PGIEPETSERQSHRNTTAPPRHHL 371
            P  +P T+E+  +R + APP HHL
Sbjct: 1149 PDEKPLTTEQVIYRVSAAPPGHHL 1172


>Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical
           protein Y41E3.9 protein.
          Length = 1440

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 177 FQFWKLDYNHHLLQKLFPFFFIDSTKGTSTATRQKKEC 290
           ++FW  +  + L+  L P  F D +   STA R  KEC
Sbjct: 228 WRFWSPNVRNDLIAAL-PEIFTDISLQQSTAVRLHKEC 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,543,331
Number of Sequences: 27780
Number of extensions: 201217
Number of successful extensions: 543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)