Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I17
         (477 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77480.1 68414.m09022 nucellin protein, putative similar to n...    28   3.8  
At5g47780.1 68418.m05902 glycosyl transferase family 8 protein c...    27   6.6  

>At1g77480.1 68414.m09022 nucellin protein, putative similar to
           nucellin GB:AAB96882 GI:2290202 [Hordeum vulgare]
           (nucellin: similar to aspartic protease and its specific
           expression in nucellar cells during degeneration)
          Length = 466

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 138 EKILIYWISMFCESIPNIDH 79
           EK  I WIS  C+ +PN++H
Sbjct: 408 EKQRIGWISSDCDKLPNVNH 427


>At5g47780.1 68418.m05902 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8; strong similarity to unknown protein
           (emb|CAB71043.1)
          Length = 616

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 257 YINSN*TKKRMSNLLKKNDTELFYFCLFTDDI 352
           Y   N ++++  N  K  DT+L+++ LF+D++
Sbjct: 287 YYALNSSEQQFPNQEKLEDTQLYHYALFSDNV 318


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,724,398
Number of Sequences: 28952
Number of extensions: 177184
Number of successful extensions: 417
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)