Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I16
(491 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0407 - 2963907-2964063,2965158-2965311,2965427-2968527,296... 30 1.2
02_01_0403 - 2938242-2941334 30 1.2
02_03_0335 + 17882461-17882527,17882616-17884723 29 1.5
01_06_1271 + 35890317-35890762,35891113-35891173,35891669-358918... 29 1.5
07_03_0615 + 19983003-19983238,19983297-19983558,19983651-199839... 29 2.0
06_03_0232 - 18507872-18508792 29 2.7
02_01_0168 + 1162447-1162866,1162940-1163317,1163606-1163829,116... 28 3.5
09_02_0621 - 11307417-11307813,11308078-11308246,11308372-113084... 27 6.2
03_01_0314 - 2477593-2480685 27 6.2
04_04_1701 + 35470535-35471170,35471254-35471403,35471745-354720... 27 8.2
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 27 8.2
>02_01_0407 -
2963907-2964063,2965158-2965311,2965427-2968527,
2968684-2968697
Length = 1141
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -3
Query: 363 LAE*SSVESFLLFKGQFAPVTLLLLTDCLNIRSVRTESNSRHGKVSPVNVVRLP 202
+ E +E LL L++C N++++ +SNS G++S +N LP
Sbjct: 294 IGELKKLEELLLGHNNMYGEVPSTLSNCTNLKTIDIKSNSFSGELSKINFSTLP 347
>02_01_0403 - 2938242-2941334
Length = 1030
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 291 LTDCLNIRSVRTESNSRHGKVSPVNVVRLP 202
L+DC N+ ++ +SNS GK++ VN LP
Sbjct: 303 LSDCTNLVTIDLKSNSFSGKLTNVNFSTLP 332
>02_03_0335 + 17882461-17882527,17882616-17884723
Length = 724
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 285 DCLNIRSVRTESNSRHGKVSPVNVVRLPV*AIAHPFTV 172
DCL+ + + + RHG + P NV+R+ HP+ V
Sbjct: 560 DCLSALAAASSAGIRHGDIRPENVIRVSN-GSRHPYFV 596
>01_06_1271 +
35890317-35890762,35891113-35891173,35891669-35891813,
35891903-35891982,35892465-35892548,35892644-35892718,
35893150-35893242,35893315-35893503
Length = 390
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 118 PACTRAGSSSVGEVSKIGDREWVGYGLNGQ 207
PA A +S + S+ G R WVGY L Q
Sbjct: 13 PAAAHAPASKASKASRPGPRSWVGYLLREQ 42
>07_03_0615 +
19983003-19983238,19983297-19983558,19983651-19983906,
19983982-19984044,19984131-19984570
Length = 418
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 242 RLLDSVRTLLILRQSVRRRRVTGAN*PLKRRKLSTELHSARHIPSSRPPPENG 400
R+++S+R++L + + R V A+ ++R + T A H+P PPP G
Sbjct: 201 RMVESMRSILRVL-TCRADDVARADAAVQRPPVPTGPRPAAHVPRPTPPPHGG 252
>06_03_0232 - 18507872-18508792
Length = 306
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -1
Query: 203 PFKP*PTHSRSPILETSPTEDDPALVQAGTRTASNSARRSKKLAILLKMCLFLSK 39
PF+P S SP+L S L + + ++S+S+ K L + MC +K
Sbjct: 140 PFRPRAPPSSSPVLPRSVPSTSAGLSSSASPSSSSSSPIKKALQAIFCMCAKTAK 194
>02_01_0168 +
1162447-1162866,1162940-1163317,1163606-1163829,
1163929-1163992,1164521-1164717,1164849-1165062
Length = 498
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 160 RLLQLKMIRPWCRQVRGLHLTVHGAARSWPYC*KCVFFFRK 38
RLLQL I ++RG++ T G S+ Y C+ F ++
Sbjct: 312 RLLQLAFIVKHWAKLRGVNETYRGTLSSYAYVLMCISFLQQ 352
>09_02_0621 -
11307417-11307813,11308078-11308246,11308372-11308440,
11308635-11308761,11308985-11309253,11309356-11309522,
11309730-11309801,11310205-11310329
Length = 464
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -1
Query: 335 FFSSRVSLRQSLFSFSRIALISGVSARNLIAGMG 234
+FSSR+++R +FSF + L + ++ G+G
Sbjct: 335 YFSSRLTMRSDVFSFGVVLLETVTGEPPIVPGVG 368
>03_01_0314 - 2477593-2480685
Length = 1030
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -3
Query: 387 GGLELGICLAE*SSVESFLLFKGQFAPVTLLLLTDCLNIRSVRTESNSRHGKVSPVNVVR 208
G + G+C + ++ +LF F LT C + VR +N +G V P+ + R
Sbjct: 370 GPVPAGLC--DSGNLTKLILFNNVFTGAIPAGLTTCSTLVRVRAHNNRLNGTV-PLGLGR 426
Query: 207 LP 202
LP
Sbjct: 427 LP 428
>04_04_1701 +
35470535-35471170,35471254-35471403,35471745-35472015,
35472152-35472262,35472476-35472650,35472748-35473020,
35473251-35473494,35473623-35473708,35473752-35473968
Length = 720
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 185 THSRSPILETSPTEDDPALVQAGTRT 108
+HS SP LET+ TE DP Q+ + T
Sbjct: 101 SHSHSPSLETA-TEADPQAAQSNSNT 125
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 333 LLFKGQFAPVTLLLLTDCLNIRSVRTESNSRHGKVSPVN 217
L F+ + L LT LN RSVRT + S GK+S ++
Sbjct: 2271 LSFRFAVCSIVLPPLTQNLNNRSVRTRAASALGKLSALS 2309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,962,550
Number of Sequences: 37544
Number of extensions: 360068
Number of successful extensions: 1083
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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