Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I16
         (491 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   9e-05
SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.52 
SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.52 
SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2)                   28   3.6  
SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)              28   4.8  
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)                   27   6.4  
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)                    27   6.4  
SB_52619| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053)                 27   8.4  
SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_10632| Best HMM Match : DEP (HMM E-Value=0.78)                      27   8.4  

>SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 25/80 (31%), Positives = 45/80 (56%)
 Frame = +1

Query: 235 PMPAIRFRADTPDIKAIREKEKSDWRKLTLEEKKALYRASFCQTYSEFQAPTGEWKGVVG 414
           P+P  R    + D++A++ KEK  W  L+ E++ ALY++ F +T  E +      K VVG
Sbjct: 26  PVPIARQEFGS-DLEALKAKEKGPWTALSKEDRVALYQSQFPKTLQESKLGEPYAKKVVG 84

Query: 415 WGLLIASLSVWIFMGMKLFV 474
              ++ SLS+  F  ++ ++
Sbjct: 85  GVGVLISLSLAFFAFLRTYM 104


>SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2342

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = -1

Query: 440  ESDAINRPQP--TTPFHSPVGAWNSEYVWQNEAR*RAFFSS-RVSLRQSL-FSFSRIALI 273
            ES A+NRP+P  T     P GAW S      E R R F SS R S R+ L  +F+R   +
Sbjct: 2140 ESRALNRPRPDLTLDESKPEGAWQSG-TESTERRKRRFVSSLRSSCRRELAAAFTRTPAV 2198

Query: 272  S 270
            +
Sbjct: 2199 N 2199


>SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 307 WRKLTLEEKKALYRASFCQTYSEFQAPTGEW 399
           WRK +  EKK +     C+T S +  P+G W
Sbjct: 210 WRKASHAEKKVVRACPICRTPSGYVVPSGVW 240


>SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2)
          Length = 341

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +1

Query: 286 REKEKSDWRKLTLEEKKALYRASFCQT 366
           RE  ++D ++  +E+KK + +A+FCQT
Sbjct: 77  REILENDEKRCPIEDKKKVKKATFCQT 103


>SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)
          Length = 621

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 27/95 (28%), Positives = 36/95 (37%)
 Frame = -3

Query: 462 HSHENPDRERCNQQTPAHNSLPFSGGGLELGICLAE*SSVESFLLFKGQFAPVTLLLLTD 283
           H  ++    RC QQTP +   P  G    L  C  E     SF +F  +++         
Sbjct: 311 HEPQHTPAMRCEQQTPGYQQ-PLVGNSTALNAC-KEHCEAYSFPVFVLKWSGCEYYKNPH 368

Query: 282 CLNIRSVRTESNSRHGKVSPVNVVRLPV*AIAHPF 178
           C  +R VR    S  GK     +  LP  AI   F
Sbjct: 369 CALLRGVRPTDLS-CGKCPSERLPVLPNLAILFDF 402


>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
          Length = 1074

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -1

Query: 188 PTHSRSPILETSPTEDDPALVQAGTR-TASNSARRSKKLAILLK 60
           P     P L+T P ED P +  A    TA N A   K+ A  +K
Sbjct: 81  PAVEEKPSLDTKPAEDKPKIEAAKQEATADNKAEPKKEQASGIK 124


>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
          Length = 1745

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -1

Query: 440  ESDAINRPQP--TTPFHSPVGAWNSEYVWQNEAR 345
            ES A NRP+P  T     P GAW S    Q+E R
Sbjct: 1154 ESQAPNRPRPDLTLDESKPEGAWQSGTDQQSEER 1187


>SB_52619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 492

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +2

Query: 125 APGPDHLQLEKSLKLVTV 178
           +PGPDH+++E +LK++ V
Sbjct: 275 SPGPDHIKVETTLKILGV 292


>SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053)
          Length = 885

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 324 KGQFAPVTLLLLTDCLNIRSVRTESNSRHGKVSPV-NVVRLPV 199
           K Q    TLL  TD L + S  TE++    K SPV +   +PV
Sbjct: 317 KDQGVEQTLLGSTDILTLSSSTTETSGTSAKTSPVTSASEMPV 359


>SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = +1

Query: 232  FPMPAIRFRADTPDIKAIREKEKSDWRKLTLEEKKALYRASFCQTYSE-FQAPTGEWKGV 408
            FP+P   F        ++R  +++   +L+   ++   RA+  +   E F++P G  KG 
Sbjct: 1034 FPLPVGFFCLVYCLFMSLRGTQRNS-NELSESYRERETRAAVLEVVCEAFRSPAGSSKGA 1092

Query: 409  VGWGLLIASLSVWIFMGMKLFVYSP 483
            V W  ++ +   ++F+ +  F+ SP
Sbjct: 1093 VYWESVLTARR-FVFLCLAAFIKSP 1116


>SB_10632| Best HMM Match : DEP (HMM E-Value=0.78)
          Length = 500

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +1

Query: 139 SSSVGEVSKIGDREWVGYGLNGQ---PNYVDRADFPMPAIRFRADTPDIKAIREKEKSDW 309
           S S  +V    D E V   L  +   P+       P P  R  A +P++  +   E +D+
Sbjct: 410 SDSRDDVEYTMDTEEVSVSLPDRGRAPSNSSHPSSPRPPSRSTALSPEL--LDSTEDTDY 467

Query: 310 RKLTLEEKKALYRASFCQTYS 372
           R LT   +  +YRA+  QT S
Sbjct: 468 RGLTDTVESIIYRATGSQTES 488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,477,827
Number of Sequences: 59808
Number of extensions: 381562
Number of successful extensions: 882
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)