Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I16
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-6|CAB63334.1| 175|Caenorhabditis elegans Hypothetical pr... 103 5e-23
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 30 0.79
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 30 0.79
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 30 0.79
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 30 1.0
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 27 5.6
AC024757-6|AAF59453.2| 305|Caenorhabditis elegans Hypothetical ... 27 5.6
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne... 27 7.4
Z92797-1|CAB07234.1| 552|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr... 27 9.8
>Z82077-6|CAB63334.1| 175|Caenorhabditis elegans Hypothetical
protein W09C5.8 protein.
Length = 175
Score = 103 bits (248), Expect = 5e-23
Identities = 53/109 (48%), Positives = 66/109 (60%)
Frame = +1
Query: 163 KIGDREWVGYGLNGQPNYVDRADFPMPAIRFRADTPDIKAIREKEKSDWRKLTLEEKKAL 342
K RE VGYG NG Y DR D+ PAIRFR + I IR KE++DW+ L+ EEKK L
Sbjct: 29 KAAGRELVGYGANGDNIYQDRLDYWYPAIRFRKEDSVIAPIRAKEQADWKNLSAEEKKLL 88
Query: 343 YRASFCQTYSEFQAPTGEWKGVVGWGLLIASLSVWIFMGMKLFVYSPLP 489
YR SF QT SEF+APTG WK + L + L + + + + VY LP
Sbjct: 89 YRYSFRQTLSEFEAPTGYWKVISAVILSVLGLCTYYAVLLNVCVYPELP 137
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 30.3 bits (65), Expect = 0.79
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 458 PMKIQTESDAINRPQPTTPFHSPVGAWNSEYVW 360
P E+ AI PQP T +P+ A +S Y W
Sbjct: 127 PATNSAETSAIVAPQPLTNLTAPIDAMSSMYTW 159
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 30.3 bits (65), Expect = 0.79
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 458 PMKIQTESDAINRPQPTTPFHSPVGAWNSEYVW 360
P E+ AI PQP T +P+ A +S Y W
Sbjct: 127 PATNSAETSAIVAPQPLTNLTAPIDAMSSMYTW 159
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 30.3 bits (65), Expect = 0.79
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 458 PMKIQTESDAINRPQPTTPFHSPVGAWNSEYVW 360
P E+ AI PQP T +P+ A +S Y W
Sbjct: 127 PATNSAETSAIVAPQPLTNLTAPIDAMSSMYTW 159
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 458 PMKIQTESDAINRPQPTTPFHSPVGAWNSEYVW 360
P E+ AI PQP T +P+ A +S Y W
Sbjct: 127 PATNSAETSAIVAPQPLTNLTAPIDAXSSMYTW 159
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 278 LISGVSARNLIAGMGKSALST*LGCPFKP*PTHSRSPILETSPTED 141
+ +G +A A +G +A++ +P P+ R+P+LET T D
Sbjct: 302 IFTGAAAAATAAAIGTAAINMDTLIDKEPEPSPPRTPVLETQKTFD 347
>AC024757-6|AAF59453.2| 305|Caenorhabditis elegans Hypothetical
protein Y37E11AL.3a protein.
Length = 305
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 381 GPHRRMEGSCGLGSVDCIALCLDFHGNE 464
G R++ CG+ D + LD+HG E
Sbjct: 128 GMSRKLHDECGINEKDILYQGLDYHGTE 155
>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
neurexin-like protein 1 protein.
Length = 1655
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 60 FQQYGQ-LLAAPCTVRCSPRTCLHQGRIIFSW 152
++ YG L+ C V CS TCL+ G +W
Sbjct: 1145 YEAYGPALVKVGCEVGCSSITCLNGGHCSVAW 1176
>Z92797-1|CAB07234.1| 552|Caenorhabditis elegans Hypothetical
protein H25P06.1 protein.
Length = 552
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 160 SKIGDREWVGYGLNGQPNYV 219
S I D EW G+G NG+ +Y+
Sbjct: 283 SMIIDTEWGGFGDNGEADYI 302
>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
F33H2.5 protein.
Length = 2144
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 256 RADTPDI--KAIREKEKS-DWRKLTLEEKKALYRASFCQT 366
RA PD+ K + + S DW L++++ L R +FC+T
Sbjct: 1632 RASRPDLGGKEMDDVRLSVDWNPLSIDDTVLLNRETFCET 1671
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,746,914
Number of Sequences: 27780
Number of extensions: 277755
Number of successful extensions: 819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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