Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I16
(491 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40980.1 68415.m05062 expressed protein 32 0.18
At3g55110.1 68416.m06120 ABC transporter family protein ATP-bind... 29 1.3
At4g26310.1 68417.m03784 elongation factor P (EF-P) family prote... 29 2.2
At1g64050.1 68414.m07255 expressed protein 27 5.2
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 27 5.2
At2g05120.1 68415.m00539 expressed protein 27 6.9
At1g73810.1 68414.m08546 expressed protein contains Pfam profile... 27 6.9
At1g05360.1 68414.m00543 expressed protein Similar to Arabidopsi... 27 6.9
At5g34970.1 68418.m04127 hypothetical protein similar to At5g368... 27 9.1
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P... 27 9.1
At4g03300.1 68417.m00451 Ulp1 protease family protein contains P... 27 9.1
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 27 9.1
At3g42730.1 68416.m04462 Ulp1 protease family protein contains P... 27 9.1
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P... 27 9.1
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 27 9.1
At1g25886.1 68414.m03180 Ulp1 protease family protein contains P... 27 9.1
>At2g40980.1 68415.m05062 expressed protein
Length = 617
Score = 32.3 bits (70), Expect = 0.18
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 333 LLFKGQFAPVTLLLLT-DCLNIRSVRTESNSRHGKVSPVNVVRLPV*AIAHPFTV 172
L+ +G+F P + DCL+ S + + RHG + P NVV + + HP+ V
Sbjct: 437 LVNEGRFGPEEAIRCCHDCLSALSSSSSAGIRHGDIRPENVVYVTS-GVRHPYFV 490
>At3g55110.1 68416.m06120 ABC transporter family protein ATP-binding
cassette-sub-family G-member 2, Mus musculus,
EMBL:AF140218
Length = 708
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 362 WQNEAR*RAFFSSRVSLRQSL-FSFSRIALISGVSARNLIA 243
WQ RA SRVSL++++ S SR L+SG S N I+
Sbjct: 349 WQQNQTARATTQSRVSLKEAIAASVSRGKLVSGSSGANPIS 389
>At4g26310.1 68417.m03784 elongation factor P (EF-P) family protein
similar to SP|Q45288 Elongation factor P (EF-P)
{Corynebacterium glutamicum}; contains Pfam profile
PF01132: Elongation factor P (EF-P)
Length = 258
Score = 28.7 bits (61), Expect = 2.2
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = -1
Query: 323 RVSLRQSLFSFSRIALISGVSARNLIAGMGKSALST*L----GCPFKP*PTHSRSPILET 156
R+S+ +SLFSFS V+ R + + +S LS+ GC + P HS L+
Sbjct: 9 RISISRSLFSFSNATSPGAVTTRRSLYSLSRSLLSSTPYAAGGCCRETPPLHSPWSALQR 68
Query: 155 SPTEDDPALVQAG 117
+ + ++AG
Sbjct: 69 RGVKVNAIQLRAG 81
>At1g64050.1 68414.m07255 expressed protein
Length = 668
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 320 PLKRRKLSTELHSARHIPSSRPPPENGRE 406
P KR KLST + R PSS P E+ R+
Sbjct: 602 PSKRLKLSTMENKKRSFPSSSSPIESDRK 630
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 244 AIRFRADTPDIKAIREKEKSDWRKLTLEEKKALYR 348
A+ ++ TP IKAI+E+ D K+ LE + LY+
Sbjct: 666 AMAMKSLTPQIKAIQERYAGDQEKIQLETAR-LYK 699
>At2g05120.1 68415.m00539 expressed protein
Length = 1234
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 160 SKIGDREWVGYGLNGQPNYVDRADFPM 240
SK+ + E V Y LN Q Y+ RAD P+
Sbjct: 762 SKVSELEEVFYCLNRQLEYIIRADQPL 788
>At1g73810.1 68414.m08546 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 418
Score = 27.1 bits (57), Expect = 6.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 190 YGLNGQPNYVDRADFPMPAIRFRAD---TPDIKAIREKEKSDWRKLTLE 327
Y +N Q +YVD D P PA R R + +P I ++ S W ++ E
Sbjct: 253 YLINSQHSYVDVYDLPGPAGRGRYNRRMSPVISRTNWRKGSQWFEIDRE 301
>At1g05360.1 68414.m00543 expressed protein Similar to Arabidopsis
hypothetical protein PID:e326839 (gb|Z97337) contains
transmembrane domains
Length = 416
Score = 27.1 bits (57), Expect = 6.9
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +1
Query: 250 RFRADTPDIKAIREKEKSDWRKLTLEEKK-ALYRASFCQTYSEFQAPTGEWKGVVGWGLL 426
R + TP I +REK + D KLTL + R + + + VGW +L
Sbjct: 6 RASSKTPAISGLREKHQQDLEKLTLTSQPFKTLRLFVVAVFLYVRRWSSYLLANVGWLIL 65
Query: 427 IASLSV 444
S+ V
Sbjct: 66 FCSIFV 71
>At5g34970.1 68418.m04127 hypothetical protein similar to At5g36850,
At1g27780, At2g05560, At3g42730, At1g52020, At2g14770,
At3g43390, At3g24390, At1g34740, At1g25886, At4g03300,
At4g05280
Length = 478
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 421 DPSPQLPSILRWGPGTRNMSGRMKLGRELSSLQGSVCASHSSPS 290
D P + ++ W +M G +L L L V A+HS+P+
Sbjct: 194 DTVPTIADLVSWLQEEESMEGWKQLALSLIILVDGVVAAHSNPN 237
>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1463
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 421 DPSPQLPSILRWGPGTRNMSGRMKLGRELSSLQGSVCASHSSPS 290
D P + ++ W +M G +L L L V A+HS+P+
Sbjct: 58 DTVPTIADLVSWLQEEESMEGWKQLALSLIILVDGVVAAHSNPN 101
>At4g03300.1 68417.m00451 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790 , At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886
Length = 1285
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 421 DPSPQLPSILRWGPGTRNMSGRMKLGRELSSLQGSVCASHSSPS 290
D P + ++ W +M G +L L L V A+HS+P+
Sbjct: 346 DTVPTIADLVSWLQEEESMEGWKQLALSLIILVDGVVAAHSNPN 389
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 421 DPSPQLPSILRWGPGTRNMSGRMKLGRELSSLQGSVCASHSSPS 290
D P + ++ W +M G +L L L V A+HS+P+
Sbjct: 194 DTVPTIADLVSWLQEEESMEGWKQLALSLIILVDGVVAAHSNPN 237
>At3g42730.1 68416.m04462 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1314
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 421 DPSPQLPSILRWGPGTRNMSGRMKLGRELSSLQGSVCASHSSPS 290
D P + ++ W +M G +L L L V A+HS+P+
Sbjct: 194 DTVPTIADLVSWLQEEESMEGWKQLALSLIILVDGVVAAHSNPN 237
>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
At1g25886, At4g03300
Length = 1139
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 421 DPSPQLPSILRWGPGTRNMSGRMKLGRELSSLQGSVCASHSSPS 290
D P + ++ W +M G +L L L V A+HS+P+
Sbjct: 194 DTVPTIADLVSWLQEEESMEGWKQLALSLIILVDGVVAAHSNPN 237
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 26.6 bits (56), Expect = 9.1
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 142 SSVGEVSKIGDRE---WVGYGLNGQPNYVDRADFPMPAIRFRADTPDIKA-IREK 294
+S+G S +++ W G Y+ RA+F +P+I TP+ KA IR K
Sbjct: 330 TSLGSASYAPEKDALVWKIKSFPGNKEYMLRAEFHLPSITAEEATPERKAPIRVK 384
>At1g25886.1 68414.m03180 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At4g03300
Length = 1201
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 421 DPSPQLPSILRWGPGTRNMSGRMKLGRELSSLQGSVCASHSSPS 290
D P + ++ W +M G +L L L V A+HS+P+
Sbjct: 194 DTVPTIADLVSWLQEEESMEGWKQLALSLIILVDGVVAAHSNPN 237
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,249,222
Number of Sequences: 28952
Number of extensions: 267633
Number of successful extensions: 785
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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