Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I15
         (107 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    24   2.3  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    22   9.3  

>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 93  PVSYW*FSCNVIWLMIKKS 37
           P+S+W  SCNVI    KKS
Sbjct: 243 PLSHWIVSCNVIGGEKKKS 261


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 21  NFISMSFFLSLTKLHY 68
           NFIS  FFL+L   HY
Sbjct: 449 NFISDIFFLNLAFHHY 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 461,979
Number of Sequences: 5004
Number of extensions: 4664
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 17
effective length of database: 2,277,410
effective search space used: 40993380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)