Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I15
         (107 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35661| Best HMM Match : AAA_5 (HMM E-Value=2.8e-09)                 27   3.2  
SB_378| Best HMM Match : TTL (HMM E-Value=1.8)                         25   7.4  
SB_39917| Best HMM Match : APH (HMM E-Value=0.00074)                   25   9.7  

>SB_35661| Best HMM Match : AAA_5 (HMM E-Value=2.8e-09)
          Length = 371

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 17  IKFYFHELFFIINQITLHENYQYDTGKG 100
           +++YF E   I+  IT   NY Y+T  G
Sbjct: 25  LRYYFEEKRVIVRMITTSINYGYETLMG 52


>SB_378| Best HMM Match : TTL (HMM E-Value=1.8)
          Length = 327

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 106 TWTFSRIVLVVFM*CNLVNDKKKLMEIKFNRFFF 5
           TWTF+ I LV     ++V   K L   +FN  FF
Sbjct: 102 TWTFAEIKLVFNTFKSVVMLAKALKAYRFNLHFF 135


>SB_39917| Best HMM Match : APH (HMM E-Value=0.00074)
          Length = 407

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 82  LVVFM*CNLVNDKKKLMEIKFNRF 11
           LVV+  CNL ND  + M++  +++
Sbjct: 360 LVVYSACNLENDNAQYMQVTVDKY 383


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,038
Number of Sequences: 59808
Number of extensions: 27044
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 16,821,457
effective HSP length: 16
effective length of database: 15,864,529
effective search space used: 301426051
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)