Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I15
         (107 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        22   0.60 
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    19   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   5.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          18   9.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    18   9.8  

>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 22.2 bits (45), Expect = 0.60
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 5  KKKSIKFYFHELFFIINQITLHE 73
          + K + FY HE  FI    + HE
Sbjct: 16 QSKPVMFYVHEGAFISGTSSFHE 38


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 58  LVNDKKKLMEIKFNR 14
           L N+KKKL+E + +R
Sbjct: 255 LHNEKKKLLEERTSR 269


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 75  FSCNVIWLMIKKSSW 31
           F+CNV    IK  SW
Sbjct: 327 FTCNVRGNPIKTVSW 341


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 32  HELFFIINQITLHEN 76
           H   F++N+  LHE+
Sbjct: 402 HIKVFVVNKDILHEH 416


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 8/32 (25%), Positives = 13/32 (40%)
 Frame = +2

Query: 2   LKKKSIKFYFHELFFIINQITLHENYQYDTGK 97
           +K  ++  YF     + N     E   YDT +
Sbjct: 691 VKGSAVDMYFRRQVELSNMYRTMEANNYDTAE 722


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,138
Number of Sequences: 438
Number of extensions: 302
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 16
effective length of database: 139,335
effective search space used:  2647365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)