Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I14
         (263 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7S4U0 Cluster: Predicted protein; n=1; Neurospora cras...    33   1.7  
UniRef50_Q7JNU7 Cluster: SEM-4 short form; n=3; Caenorhabditis|R...    32   2.9  
UniRef50_A2WPT3 Cluster: Putative uncharacterized protein; n=1; ...    31   3.8  
UniRef50_Q4S6Z2 Cluster: Chromosome 14 SCAF14723, whole genome s...    31   5.1  
UniRef50_Q8AB41 Cluster: Putative uncharacterized protein; n=1; ...    31   5.1  
UniRef50_Q6R3H3 Cluster: Conserved protein; n=1; Methylomicrobiu...    31   6.7  
UniRef50_Q9FHB9 Cluster: Genomic DNA, chromosome 5, TAC clone:K2...    31   6.7  

>UniRef50_Q7S4U0 Cluster: Predicted protein; n=1; Neurospora
           crassa|Rep: Predicted protein - Neurospora crassa
          Length = 1272

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +3

Query: 117 EGKLELFSGVVIEKDASGENKLNVKFEPGELREAARTFEEARGKIKKYT 263
           +G L +  G  I+ DA G+  + V  E  + RE  R  EEAR K+K  T
Sbjct: 669 DGTLPMDMGPDIDMDADGDMDMCVDQETEKRRERERYLEEARLKVKDVT 717


>UniRef50_Q7JNU7 Cluster: SEM-4 short form; n=3; Caenorhabditis|Rep:
           SEM-4 short form - Caenorhabditis elegans
          Length = 715

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 159 LSQ*QHQRIAPVSLHLHSPPTGAALQATTM 70
           + Q QHQ   P  +H+H+PPT AA  A  +
Sbjct: 346 MHQHQHQIAPPQRIHIHNPPTSAASAAAAV 375


>UniRef50_A2WPT3 Cluster: Putative uncharacterized protein; n=1; Oryza
            sativa (indica cultivar-group)|Rep: Putative
            uncharacterized protein - Oryza sativa subsp. indica
            (Rice)
          Length = 967

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 55   VFGIMHGG--SLQGCTSGRRMKMKGNWSYSLVLSLRKMHLAK 174
            V G++  G  SL GC  G   K+ G W+   + S++K+H +K
Sbjct: 925  VVGMVGSGKSSLLGCILGEMRKISGEWNCGSLSSIKKVHESK 966


>UniRef50_Q4S6Z2 Cluster: Chromosome 14 SCAF14723, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 14 SCAF14723, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 3029

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 103 AHWCSPASYHHA*YQTQYTHFLKIYSEV 20
           +H+ SP SYHH+ Y + Y HFL  +S +
Sbjct: 167 SHFLSP-SYHHSIYNSFYNHFLHSHSSL 193


>UniRef50_Q8AB41 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides thetaiotaomicron|Rep: Putative
           uncharacterized protein - Bacteroides thetaiotaomicron
          Length = 264

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 14/51 (27%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = +3

Query: 48  VYCVWYYAWW*LAGL-HQWAANEDEGKLELFSGVVIEKDASGENKLNVKFE 197
           + C+   + W L+   ++ A+  +E + E+F+G V++  ++G  +LN+KF+
Sbjct: 7   ILCLTSASLWMLSCTDYEVASYPEENETEVFNGTVLDYLSTGNERLNLKFD 57


>UniRef50_Q6R3H3 Cluster: Conserved protein; n=1; Methylomicrobium
           sp. AMO1|Rep: Conserved protein - Methylomicrobium sp.
           AMO1
          Length = 376

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 87  GLH-QWAANEDEGKLELFSGVVIEKDASGENKLNV 188
           G H QW+ N D  K  LF+GV+     S E KL V
Sbjct: 203 GFHTQWSENLDTDKPFLFAGVINRSPLSSEQKLRV 237


>UniRef50_Q9FHB9 Cluster: Genomic DNA, chromosome 5, TAC
           clone:K24M7; n=4; Arabidopsis thaliana|Rep: Genomic DNA,
           chromosome 5, TAC clone:K24M7 - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 790

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +3

Query: 90  LHQWAANEDEGKLELFSGVVIEKDASGENKLNVKFEPGELREAARTFEEARGKIKKY 260
           L +   +E++  L L + + +E++A    +   K E    RE A+  EEARG+ +KY
Sbjct: 596 LQKQVEDENQEILRLQNELEVERNALSIARDWAKDEARRAREQAKVLEEARGRWEKY 652


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,045,612
Number of Sequences: 1657284
Number of extensions: 4098819
Number of successful extensions: 10816
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10814
length of database: 575,637,011
effective HSP length: 65
effective length of database: 467,913,551
effective search space used: 10294098122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)