Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I14
         (263 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   1.3  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   1.3  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    24   4.0  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    23   5.3  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    23   7.0  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    23   7.0  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    23   9.2  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 158 RCIWRKQTQCEIRAWRTERSC*NFRRSS 241
           RCIWRK  +C   A+ +ER+   FR  S
Sbjct: 163 RCIWRKGKKCH-SAYISERTKPIFRSES 189


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 105 ANEDEGKLELFSGVVIEKDASGENK 179
           +  D+G L+LF    +EK+  G+N+
Sbjct: 55  SENDDGTLDLFGDSELEKEQKGDNQ 79


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 45   CVYCVWYYA 71
            C +C WYYA
Sbjct: 1166 CTFCCWYYA 1174


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 105 ANEDEGKL--ELFSGVVIEKDASGENKLNVKFEPGELREAARTFEEARGKI 251
           A ++E K    L   V +E  A  E++ +      E  EA R+FE+++GK+
Sbjct: 207 AKQEEKKRAKRLNDAVPLEDMAGSESRPSYDSIFRESFEAKRSFEDSKGKV 257


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 153 EKDASGENKLNVKFEPGELREAARTFEEARGKI 251
           EKD+ G +  +V  +P   +  AR+F   R KI
Sbjct: 213 EKDSRGHSLPSVLTQPINCQADARSFYAERSKI 245


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 120 LHLHSPPTGAALQATTMHNTKHNTRIFSKFTLKLSGFLV 4
           LHLH     + L A+   +T+ N  +FS   L+ +  L+
Sbjct: 130 LHLHDHDDLSFLDASATSSTRFNLGLFSYPVLQAADILL 168


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 108 NEDEGKLELFSGVVIEKDASGENKLNVKFE 197
           NE+E KL+   G+   +DAS   K  V+ E
Sbjct: 574 NEEEPKLKGVLGMKFMRDASNRQKALVQDE 603


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,021,514
Number of Sequences: 5004
Number of extensions: 16858
Number of successful extensions: 35
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)