Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I14
         (263 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,641...    26   4.8  
04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715...    26   4.8  
02_04_0014 + 18916942-18917142,18917350-18917628,18917719-189181...    26   4.8  
09_04_0516 - 18246439-18246582,18246763-18246899,18247067-182470...    25   6.3  
04_04_0311 - 24309411-24309525,24309627-24309841                       25   6.3  
04_01_0518 - 6795833-6796450,6799940-6800164                           25   8.3  
01_03_0227 + 13967966-13968559                                         25   8.3  

>06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,
            6412568-6412695,6412855-6412971,6414936-6415475,
            6415554-6417344,6418359-6421407,6421765-6421823,
            6422738-6422791
          Length = 1978

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 108  SPPTGAALQATTMHNTKHNTRIFSKFTLKL 19
            SPP G  L  +  +N+K   + F K T+++
Sbjct: 1851 SPPKGQKLHISCKNNSKFGKKSFGKVTIQI 1880


>04_01_0556 -
           7156851-7157096,7157288-7157530,7158112-7158153,
           7158324-7158425,7159209-7159342,7161071-7161131,
           7161192-7161284,7161557-7161639,7161984-7162239
          Length = 419

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 161 CIWRKQTQCEIRAWRTERSC*NFRRSSW 244
           CI +  T  E+R+WR   +  N  R  W
Sbjct: 234 CIGKSLTMWELRSWRPYGTTINLMRHKW 261


>02_04_0014 +
           18916942-18917142,18917350-18917628,18917719-18918114,
           18924837-18925085
          Length = 374

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
 Frame = +3

Query: 60  WYYAWW*LAGLHQWAANEDEGKLELFSGVVIEKDASGEN--KLNVKFE---PGELREAAR 224
           WY AW    GLH W         ELF   V+ +   G +  K N  FE    G + E   
Sbjct: 88  WYKAWRQRVGLHGW---------ELFRDAVVREFDFGTHHIKANAMFELKQTGTVDEYKS 138

Query: 225 TFEEARGKIKKY 260
            F++    +K Y
Sbjct: 139 QFDDLLYNVKLY 150


>09_04_0516 -
           18246439-18246582,18246763-18246899,18247067-18247097,
           18248097-18248194,18248222-18248291,18248704-18248835,
           18249213-18249386
          Length = 261

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +1

Query: 64  IMHGGSLQGCTSGRRMKMK---GNWSYSLVLSLRKM 162
           I  G +L+GC +G+RM M     ++ Y L+ ++RK+
Sbjct: 166 IPRGDTLKGCWNGQRMWMVRRITSYLYDLIDTIRKL 201


>04_04_0311 - 24309411-24309525,24309627-24309841
          Length = 109

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 155 ERCIWRKQTQCEIRAWRTERSC*NFRRSS 241
           +RC+ R + + E+ +WRT     + RR S
Sbjct: 57  DRCVQRMRARRELCSWRTRNLWGSLRRGS 85


>04_01_0518 - 6795833-6796450,6799940-6800164
          Length = 280

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 70  HGGSLQGCTSGRRMKMKGNWSYSLVL 147
           HG S  G T  RRM +  +W  S +L
Sbjct: 26  HGASAGGYTGVRRMSIGSSWCVSSML 51


>01_03_0227 + 13967966-13968559
          Length = 197

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 141 QRIAPVSLHLHSPPTGAA 88
           +R+ P  +HLH  P+GAA
Sbjct: 164 RRMCPSHIHLHPRPSGAA 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,728,296
Number of Sequences: 37544
Number of extensions: 115589
Number of successful extensions: 320
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)