Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I14
         (263 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_45179| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_6734| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.5  
SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.6  

>SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 144 HQRIAPVSLHLHSPPTGAALQATTMHNTKHNT 49
           HQ I      LH+     +L  TT HN+ HNT
Sbjct: 8   HQAITTRHNSLHNTTRHNSLHNTTRHNSLHNT 39


>SB_45179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 90  LHQWAANEDEGKLELFSGVVIEKDASGENKLNVKFEPGELREAARTFEEARGKIKK 257
           L QW A++DE   EL       K +  E K + +     L+EA ++FE +  K ++
Sbjct: 187 LQQWRASDDEILQELHKQRKEMKQSFEEAKQSFEEAKQSLKEAKQSFEGSETKRRR 242


>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -1

Query: 104 RPLV-QPCKLPPCIIPN 57
           RP V +PC+LPPC  PN
Sbjct: 671 RPKVTRPCQLPPCPPPN 687


>SB_6734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 57  HNTRIFSKFTLKLSGFLVP 1
           H    F KF ++++GFL+P
Sbjct: 66  HKATYFDKFRIRVAGFLIP 84


>SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 569

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 75  TMHNTKHNTRIFS 37
           T HN KH TR+FS
Sbjct: 180 TKHNAKHATRVFS 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,642,983
Number of Sequences: 59808
Number of extensions: 127552
Number of successful extensions: 283
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 16,821,457
effective HSP length: 64
effective length of database: 12,993,745
effective search space used: 298856135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)