Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I14
         (263 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    32   0.064
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    32   0.064
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    32   0.064
AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical ...    26   3.2  
U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z54342-5|CAA91147.1|  457|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       25   5.6  
Z48585-3|CAA88485.1|  322|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 31.9 bits (69), Expect = 0.064
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 159 LSQ*QHQRIAPVSLHLHSPPTGAALQATTM 70
           + Q QHQ   P  +H+H+PPT AA  A  +
Sbjct: 375 MHQHQHQIAPPQRIHIHNPPTSAASAAAAV 404


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 31.9 bits (69), Expect = 0.064
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 159 LSQ*QHQRIAPVSLHLHSPPTGAALQATTM 70
           + Q QHQ   P  +H+H+PPT AA  A  +
Sbjct: 346 MHQHQHQIAPPQRIHIHNPPTSAASAAAAV 375


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 31.9 bits (69), Expect = 0.064
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 159 LSQ*QHQRIAPVSLHLHSPPTGAALQATTM 70
           + Q QHQ   P  +H+H+PPT AA  A  +
Sbjct: 375 MHQHQHQIAPPQRIHIHNPPTSAASAAAAV 404


>AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical
           protein T10D4.6 protein.
          Length = 796

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 147 QHQRIAPVSLHLHSPPTGA 91
           +H+ + P S  LH+PP+G+
Sbjct: 697 EHKELKPASKKLHTPPSGS 715


>U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical
           protein F18C5.4 protein.
          Length = 308

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 92  QPCKLPPCIIPNT 54
           +PCK PPCII  T
Sbjct: 256 KPCKNPPCIIKTT 268


>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical
           protein C25G4.5 protein.
          Length = 1263

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 171 ENKLNVKFEPGELREAARTFEEARGKIK 254
           ENK +V FE G L  +   F+++ GKI+
Sbjct: 835 ENKPHVAFEMGLLGNSGMFFKKSYGKIR 862


>Z54342-5|CAA91147.1|  457|Caenorhabditis elegans Hypothetical
           protein C08H9.10 protein.
          Length = 457

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +3

Query: 81  LAGLHQWAANEDEGKLELFSGVVIEKDASGENKLNVKFE 197
           + G+  W  ++D+G   L   V   +  +G+ K  +KF+
Sbjct: 417 IGGITMWTIDQDDGDHTLLKVVSSAELCTGDEKNTIKFK 455


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 171 ENKLNVKFEPGELREAARTFEEARGKIK 254
           ENK +V FE G L  +   F+++ GKI+
Sbjct: 835 ENKPHVAFEMGLLGNSGMFFKKSYGKIR 862


>Z48585-3|CAA88485.1|  322|Caenorhabditis elegans Hypothetical
           protein ZK673.3 protein.
          Length = 322

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 117 EGKLELFSGVVIEKDASGENKLNVKFEPGELREAARTFEE 236
           E K+E       EK    EN + VK EP E  E  +T  +
Sbjct: 216 EIKMESPQEEAAEKSKFSENLVEVKLEPIETHELDKTISD 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,684,230
Number of Sequences: 27780
Number of extensions: 98615
Number of successful extensions: 261
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)