Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I14
(263 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g52410.2 68418.m06502 expressed protein 31 0.14
At5g52410.1 68418.m06503 expressed protein 31 0.14
At1g78940.1 68414.m09203 protein kinase family protein contains ... 27 1.7
At3g11385.1 68416.m01386 DC1 domain-containing protein contains ... 27 2.3
At3g11370.1 68416.m01382 DC1 domain-containing protein contains ... 27 2.3
At2g42720.1 68415.m05291 F-box family protein contains F-box dom... 26 3.0
At3g22370.1 68416.m02824 alternative oxidase 1a, mitochondrial (... 25 5.2
At3g22360.1 68416.m02823 alternative oxidase 1b, mitochondrial (... 25 5.2
At5g57035.1 68418.m07119 protein kinase family protein contains ... 25 6.9
At5g22670.1 68418.m02649 F-box family protein contains F-box dom... 25 6.9
At3g59410.1 68416.m06626 protein kinase family protein low simil... 25 6.9
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 25 6.9
At2g40880.1 68415.m05045 cysteine protease inhibitor, putative /... 25 6.9
At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identic... 25 6.9
At3g42630.1 68416.m04430 pentatricopeptide (PPR) repeat-containi... 25 9.1
At3g05040.1 68416.m00547 expressed protein weak similarity to ex... 25 9.1
At2g27410.1 68415.m03312 hypothetical protein contains Pfam prof... 25 9.1
>At5g52410.2 68418.m06502 expressed protein
Length = 761
Score = 30.7 bits (66), Expect = 0.14
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 90 LHQWAANEDEGKLELFSGVVIEKDASGENKLNVKFEPGELREAARTFEEARGKIKKY 260
L + +E++ L L + + +E++A + K E RE A+ EEARG+ +KY
Sbjct: 567 LQKQVEDENQEILRLQNELEVERNALSIARDWAKDEARRAREQAKVLEEARGRWEKY 623
>At5g52410.1 68418.m06503 expressed protein
Length = 510
Score = 30.7 bits (66), Expect = 0.14
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 90 LHQWAANEDEGKLELFSGVVIEKDASGENKLNVKFEPGELREAARTFEEARGKIKKY 260
L + +E++ L L + + +E++A + K E RE A+ EEARG+ +KY
Sbjct: 316 LQKQVEDENQEILRLQNELEVERNALSIARDWAKDEARRAREQAKVLEEARGRWEKY 372
>At1g78940.1 68414.m09203 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 680
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 168 GENKLNVKFEPGELREAARTFEEARGKIKKYT 263
G N+L +KF + + TF E G+ Y+
Sbjct: 215 GSNRLGIKFSDPDFLNESSTFSEESGRTSSYS 246
>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 766
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 128 QFPFIFIRRPLVQPC 84
Q P +F RRPL+ PC
Sbjct: 337 QHPLVFYRRPLLTPC 351
>At3g11370.1 68416.m01382 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 589
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 128 QFPFIFIRRPLVQPC 84
Q P +F RRPL+ PC
Sbjct: 165 QHPLVFYRRPLLTPC 179
>At2g42720.1 68415.m05291 F-box family protein contains F-box domain
Pfam:PF00646
Length = 443
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 43 NACIVFGIMHGGSLQGCTSGRRMKMKGNWSY 135
+AC+ GI+ G C S R+K+ WSY
Sbjct: 359 DACVCSGIL--GKSSSCLSSSRVKVLEIWSY 387
>At3g22370.1 68416.m02824 alternative oxidase 1a, mitochondrial
(AOX1A) identical to GB:Q39219 [SP|Q39219] from
[Arabidopsis thaliana]
Length = 354
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +1
Query: 67 MHGGSLQGCTSGRRMKMKGNWSYSLV--LSLRKMHL 168
M GG L C S RR + G W +L+ +MHL
Sbjct: 191 MVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHL 226
>At3g22360.1 68416.m02823 alternative oxidase 1b, mitochondrial
(AOX1B) identical to GB:O23913 [SP|O23913] from
[Arabidopsis thaliana]
Length = 325
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +1
Query: 67 MHGGSLQGCTSGRRMKMKGNWSYSLV--LSLRKMHL 168
M GG L C S RR + G W +L+ +MHL
Sbjct: 162 MVGGMLVHCKSLRRFEQSGGWIKALLEEAENERMHL 197
>At5g57035.1 68418.m07119 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 786
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 40 ENACIVFGIMHGGSLQGCTSGRRMKMKGNW 129
EN C+V+ M GSL S ++ K +W
Sbjct: 486 ENGCLVYEYMENGSLDCHISPKKGKPSLSW 515
>At5g22670.1 68418.m02649 F-box family protein contains F-box domain
Pfam:PF00646
Length = 443
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -3
Query: 120 LHLHSPPTGAALQATTMHNTKHNTRIFSKFTLKL 19
+ +H+P +GA + + N+ + KFTL+L
Sbjct: 379 VEIHTPISGAEAEMKLVKYFLENSAVLKKFTLQL 412
>At3g59410.1 68416.m06626 protein kinase family protein low similarity
to GCN2 eIF2alpha kinase [Mus musculus] GI:6066585;
contains Pfam profiles PF03129: Anticodon binding domain,
PF00069: Protein kinase domain
Length = 1241
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 119 FIFIRRPLVQPCKLPPCII 63
++FIRR L+Q KLP ++
Sbjct: 972 WVFIRRQLLQELKLPEAVV 990
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 202 PGSNFTLSLFSPDASFSMTTP 140
PGS ++SL SP++ FS + P
Sbjct: 94 PGSTVSVSLASPESRFSRSFP 114
>At2g40880.1 68415.m05045 cysteine protease inhibitor, putative /
cystatin, putative (FL3-27) similar to PRLI-interacting
factor M [Arabidopsis thaliana] GI:11139270, cysteine
proteinase inhibitor [Brassica rapa] GI:762785; contains
Pfam profile PF00031: Cystatin domain
Length = 125
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 81 LAGLHQWAANEDEGKLELFSGVVIEKDASGENKL 182
L G+H N++ G++E + I++ +NK+
Sbjct: 35 LGGVHDLRGNQNSGEIESLARFAIQEHNKQQNKI 68
>At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identical
to receptor kinase (CLV1) GB:AAB58929 GI:2160756
[Arabidopsis thaliana]
Length = 980
Score = 25.0 bits (52), Expect = 6.9
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 87 GLHQWAANEDEGKLELFSGVVIEKDASGENKLNVKFEP 200
GLH W + FSGV + DA LNV F P
Sbjct: 45 GLHDWIHSSSPDAHCSFSGVSCDDDAR-VISLNVSFTP 81
>At3g42630.1 68416.m04430 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 415
Score = 24.6 bits (51), Expect = 9.1
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +3
Query: 120 GKLELFSGVVIEKDASG----ENKLNVKFEPGELREAARTFEEARGKIKKY 260
G+LEL GV+ E D+ G NV + E+A G++KK+
Sbjct: 166 GQLELMEGVIEEMDSKGVLLEAETANVIVRYYSFFGSLDKMEKAYGRVKKF 216
>At3g05040.1 68416.m00547 expressed protein weak similarity to
exportin 5 [Homo sapiens] GI:10444427
Length = 522
Score = 24.6 bits (51), Expect = 9.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 74 PCIIPNTIHAFSQ 36
PC+ PN +HAF +
Sbjct: 452 PCLTPNDLHAFEE 464
>At2g27410.1 68415.m03312 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 309
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 103 RRMKMKGNWSYSLV 144
R+ KMKGNW Y V
Sbjct: 208 RKWKMKGNWIYVFV 221
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,334,275
Number of Sequences: 28952
Number of extensions: 90776
Number of successful extensions: 259
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,070,560
effective HSP length: 66
effective length of database: 10,159,728
effective search space used: 213354288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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