Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I13
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    88   3e-19
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    27   0.73 
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   1.7  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   3.0  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    25   3.0  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    23   9.0  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    23   9.0  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 88.2 bits (209), Expect = 3e-19
 Identities = 37/54 (68%), Positives = 42/54 (77%)
 Frame = +1

Query: 64  MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 225
           M H N+W+SHPR+YG+GSR C     R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 1   MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 27.1 bits (57), Expect = 0.73
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 16  SCFPLLGLEKTN*FYIMGHANIWYSHPRRY 105
           S + + G +K N FY +   N WY    RY
Sbjct: 230 SSWDIYGFKKANQFYTVDQYNTWYGPYSRY 259


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -2

Query: 300 IYLVLIEMKQFFAYIKNLLNLSLVQLFKSNIMRILSEALPAD 175
           +Y  L  ++ F  +  NL    L Q+F   ++  + +A+P+D
Sbjct: 493 VYQALFLIQVFELFTSNLKQHRLAQMFHPVLIEAMRQAIPSD 534


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 117 PFMPSLLKQTWSHS*IWLEYLQ 182
           PF  S L++TW++   W E LQ
Sbjct: 396 PFSGSTLQETWTNLYYWREMLQ 417


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = -2

Query: 246  LNLSLVQLFKSNIMRILSEALPADIQAIFTNETMSV 139
            L +SL+Q+F+S++ + + E++  D+  +   E  S+
Sbjct: 1593 LKISLIQIFRSHLWQKIHESVVWDLCQVLDQELESL 1628


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 106 GQGSRSCRACSNRHGLIRKYGLNICRQC 189
           G GS    A  N+ G +  +GLNI RQC
Sbjct: 285 GAGSYHSFAIDNK-GRVYAWGLNITRQC 311


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 25  PLLGLEKTN*FYIMGHANIWYSHPRRYGQGSRSCRA-CSNRHGLIRKYGLNI 177
           P+L ++    F I      W  +  R GQGS   +A  S+   L +K  LN+
Sbjct: 128 PILPIDSAGGFLIEWWNVFWDIYNARRGQGSEPAKAYMSHISNLRKKSRLNL 179


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 179 QIFKPYLRMRPCLFEQARHEREPCP 105
           Q+FKP +++R  L +  +  REP P
Sbjct: 98  QVFKPSIKLRSVLEQILQLLREPNP 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,111
Number of Sequences: 5004
Number of extensions: 26408
Number of successful extensions: 71
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)