Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I13
         (331 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22175| Best HMM Match : HemolysinCabind (HMM E-Value=1.6e-08)       28   1.6  
SB_35017| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_42805| Best HMM Match : Aminotran_5 (HMM E-Value=8.7e-25)           27   3.7  
SB_6819| Best HMM Match : zf-CCHC (HMM E-Value=0.46)                   26   6.5  
SB_15799| Best HMM Match : PH (HMM E-Value=0.76)                       26   8.5  

>SB_22175| Best HMM Match : HemolysinCabind (HMM E-Value=1.6e-08)
          Length = 298

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 109 QGSRSCRACSNRHGLIRKYGLNICRQCFR 195
           Q ++ C AC +R  L+   G N C   FR
Sbjct: 183 QNNKGCNACDSRFRLVFSKGCNACDSRFR 211


>SB_35017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 106 GQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 231
           G+ +R   AC +   ++   G N+CR C   + +D   + +D
Sbjct: 59  GESARF-EACCDGQDMVNDNGANVCRNCGVHHGYDYAVEYVD 99


>SB_42805| Best HMM Match : Aminotran_5 (HMM E-Value=8.7e-25)
          Length = 357

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 15  IVFPSFGSRENKLILHHGSRKYLVFTPT*IRAGFPFMPSLLKQTWSHS*IWLEYLQ 182
           I+F S G+  N +++H     Y     T  RA  P +P ++     H  + L   Q
Sbjct: 9   IIFTSGGTESNNMVIHTAIEHYKKQRETTGRAILPPIPHIITSNQEHDSVCLPLKQ 64


>SB_6819| Best HMM Match : zf-CCHC (HMM E-Value=0.46)
          Length = 335

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +1

Query: 88  SHPRRYGQGSRSCRACSNRH--GLIRKYGLNICRQC 189
           + P R+ +   SCR C  +H  G    Y   ICR+C
Sbjct: 275 ARPSRFDRNQNSCRFCGLQHDRGNCPAYNA-ICRRC 309


>SB_15799| Best HMM Match : PH (HMM E-Value=0.76)
          Length = 836

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 84  PDICVTHDVKLVCFLETQKRETRS 13
           PDIC+T  ++  CF  TQK + ++
Sbjct: 81  PDICLTTCMEQSCFKITQKNKVKN 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,879,472
Number of Sequences: 59808
Number of extensions: 201205
Number of successful extensions: 425
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)