Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I13
         (331 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   6.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   6.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   6.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   6.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   6.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   6.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   8.9  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 130 LGMNGNPARIYVGVNT 83
           L  N  PAR+ +GV T
Sbjct: 324 LEWNAVPARVMIGVTT 339


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 130 LGMNGNPARIYVGVNT 83
           L  N  PAR+ +GV T
Sbjct: 293 LEWNAVPARVMIGVTT 308


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 130 LGMNGNPARIYVGVNT 83
           L  N  PAR+ +GV T
Sbjct: 344 LEWNAVPARVMIGVTT 359


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 130 LGMNGNPARIYVGVNT 83
           L  N  PAR+ +GV T
Sbjct: 293 LEWNAVPARVMIGVTT 308


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -1

Query: 181 CRYSSHIYE*DHVC 140
           CRY +H +   H C
Sbjct: 737 CRYEAHCFALCHCC 750


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 142 CLSRLGMNGNPARIYVGVNT 83
           C   L   G P R+ +G++T
Sbjct: 570 CSHHLTHKGKPIRMRIGIHT 589


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 169 LNICRQCFREYAHDIGFKKL 228
           LN+  Q    Y+H + FK L
Sbjct: 453 LNLAAQKREYYSHYVAFKSL 472


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,050
Number of Sequences: 438
Number of extensions: 2074
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)