Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I13
(331 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C) 96 6e-21
At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B) ribo... 96 6e-21
At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A) ribo... 96 6e-21
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 28 1.7
At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl methyl... 27 2.3
At1g29370.1 68414.m03591 kinase-related similar to putative prot... 26 5.3
At1g29350.1 68414.m03588 expressed protein 26 5.3
At3g20500.1 68416.m02596 calcineurin-like phosphoesterase family... 26 7.0
At5g51800.1 68418.m06423 expressed protein 25 9.3
At1g67025.1 68414.m07621 hypothetical protein 25 9.3
>At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)
Length = 56
Score = 95.9 bits (228), Expect = 6e-21
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +1
Query: 64 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 225
MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR A +IGF K
Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
>At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B)
ribosomal protein S29, rat, PIR:S30298
Length = 56
Score = 95.9 bits (228), Expect = 6e-21
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +1
Query: 64 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 225
MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR A +IGF K
Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
>At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A)
ribosomal protein S29, rat, PIR:S30298
Length = 56
Score = 95.9 bits (228), Expect = 6e-21
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +1
Query: 64 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 225
MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR A +IGF K
Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +2
Query: 50 TNFTSWVTQISGIHTHVDTGRVPVHAEPAQTDMVSFVNMA*ISAGSASE 196
TN I GI VDTGRV V ++T M S+ + IS SAS+
Sbjct: 679 TNVAETSLTIPGIKYVVDTGRVKVKNYDSKTGMESY-EVDWISQASASQ 726
>At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl
methyltransferase family protein similar to
SAM:salicylic acid carboxyl methyltransferase (SAMT)
[GI:6002712][Clarkia breweri] and to SAM:benzoic acid
carboxyl methyltransferase
(BAMT)[GI:9789277][Antirrhinum majus]
Length = 385
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 88 SHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDI 213
SH + GQ SC L+ +G +I F +YAH +
Sbjct: 323 SHKAKAGQKEASCIRAVTETMLVAHFGDDIIDALFHKYAHHV 364
>At1g29370.1 68414.m03591 kinase-related similar to putative protein
kinase (GI:11125348) [Homo sapiens]; similar to Paired
box protein Pax-8 (Swiss-Prot:P47240) [Canis familiaris]
Length = 831
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 114 FPFMPSLLKQTWSHS*IWLEYLQAVLPR 197
+P+MPS +QT++ + + + L A+LP+
Sbjct: 618 YPYMPSAFQQTFAGNSAYHQQLAALLPQ 645
>At1g29350.1 68414.m03588 expressed protein
Length = 831
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 114 FPFMPSLLKQTWSHS*IWLEYLQAVLPR 197
+P+MPS +QT++ + + + L A+LP+
Sbjct: 618 YPYMPSAFQQTFAGNSAYHQQLAALLPQ 645
>At3g20500.1 68416.m02596 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 437
Score = 25.8 bits (54), Expect = 7.0
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -3
Query: 179 QIFKPYLRMRPCLFEQARHEREPCPYL 99
++ +P +RP + Q HE+E P++
Sbjct: 191 ELVQPLASVRPWMVTQGNHEKESIPFI 217
>At5g51800.1 68418.m06423 expressed protein
Length = 972
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 191 KHCLQIFKPYLRMRPCLFEQARHEREPCP 105
+HCL + P LFE AR+ +EP P
Sbjct: 505 EHCLSKLRVPAGNLPSLFELARYLQEPPP 533
>At1g67025.1 68414.m07621 hypothetical protein
Length = 221
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 118 RSCRACSNRHGLIRKYGLNICRQC 189
+SCR CSN HG+ ++ QC
Sbjct: 182 QSCRGCSNSHGVCGSEPVSGSFQC 205
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,890,231
Number of Sequences: 28952
Number of extensions: 135802
Number of successful extensions: 303
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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