Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I12
         (319 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   127   2e-30
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   125   9e-30
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773...    28   1.8  
12_02_1131 - 26358339-26360609                                         26   7.4  
08_01_0200 + 1632883-1633913,1634620-1634677                           26   7.4  
10_08_1016 - 22262760-22264331                                         25   9.7  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  127 bits (307), Expect = 2e-30
 Identities = 58/88 (65%), Positives = 69/88 (78%)
 Frame = +2

Query: 56  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 235
           GFVK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 236 CQVAYSRIEGDHIVCAAYSHELPRYGIK 319
            Q+ Y+ I GD ++ AAYSHELPRYG++
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLE 87


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  125 bits (301), Expect = 9e-30
 Identities = 57/88 (64%), Positives = 68/88 (77%)
 Frame = +2

Query: 56  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 235
           GFVK  K   Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 236 CQVAYSRIEGDHIVCAAYSHELPRYGIK 319
            Q+ Y+ I GD ++ AAYSHELPRYG++
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLE 87


>08_02_1410 -
           26876243-26876497,26877129-26877239,26877240-26877324,
           26877620-26877672,26878318-26878440,26878514-26878597,
           26878708-26878773,26879512-26879584,26879854-26879888,
           26879970-26880212
          Length = 375

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 179 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 301
           +YNT +YR +  +S K V C+ +   +  E DH+   A S  L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316


>12_02_1131 - 26358339-26360609
          Length = 756

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 230 HLYWITVQSVGTLECCICF 174
           HL+WIT +SVG  +  + F
Sbjct: 221 HLHWITTKSVGDADAIMSF 239


>08_01_0200 + 1632883-1633913,1634620-1634677
          Length = 362

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -3

Query: 206 SVGTLECCICFYP-GQRG 156
           +VG  + CICFYP GQ G
Sbjct: 33  TVGGYDWCICFYPEGQGG 50


>10_08_1016 - 22262760-22264331
          Length = 523

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 221 WITVQSVGTLECCIC 177
           ++  Q+VGT+ CCIC
Sbjct: 15  FVPTQTVGTVLCCIC 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,286,296
Number of Sequences: 37544
Number of extensions: 145415
Number of successful extensions: 322
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)