Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I12
         (319 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)              81   3e-16
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)          50   3e-07
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.9  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    28   1.9  
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     27   2.5  
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)                     27   2.5  
SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_50009| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)                      26   5.8  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    26   5.8  
SB_17541| Best HMM Match : DUF638 (HMM E-Value=1.8)                    26   5.8  
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_3427| Best HMM Match : Homeobox (HMM E-Value=4e-24)                 26   5.8  
SB_55265| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.6  
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)           26   7.6  
SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21)            26   7.6  
SB_3426| Best HMM Match : Homeobox (HMM E-Value=3.4e-22)               26   7.6  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score = 80.6 bits (190), Expect = 3e-16
 Identities = 32/42 (76%), Positives = 38/42 (90%)
 Frame = +2

Query: 116 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 241
           RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 18/26 (69%), Positives = 25/26 (96%)
 Frame = +2

Query: 242 VAYSRIEGDHIVCAAYSHELPRYGIK 319
           +AY+++EGD I+CAAY+HELPRYG+K
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVK 26


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 203 LIVRLSNKDVTCQVAYSRIEGD-HIVC 280
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 71  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 166
           VK+K+  KR   K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 68  VVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNK 181
           V K K+   +++ K KR+RE       RKR  V+ K K
Sbjct: 196 VCKRKRELAKHKHKRKRKRESAKHRLKRKRESVKHKRK 233



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 74  KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKD 229
           K++   KR  VK KR+++ K+  + RK     DK+K        +V L   D
Sbjct: 218 KHRLKRKRESVKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLIVSVVELVTHD 269


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 56   GFVKVVKNKQYFKRYQVKFKRRREGKTDY 142
            GF++ +K +    RY VK  R R    DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 209 VRLSNKDVTCQVAYSRIEGDHIVCAAY 289
           VRL ++D TC  +YS I  +  +CA Y
Sbjct: 405 VRLVSRD-TCNASYSGIINERYICAGY 430


>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 718

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 209 VRLSNKDVTCQVAYSRIEGDHIVCAAY 289
           VRL ++D TC  +YS I  +  +CA Y
Sbjct: 690 VRLVSRD-TCNASYSGIINERYICAGY 715


>SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 818

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/71 (21%), Positives = 37/71 (52%)
 Frame = +2

Query: 65  KVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 244
           K +K+ Q+     V+F+  +E + D + R + ++QD N   T +  ++++  N+    ++
Sbjct: 400 KTMKSMQFKNEELVRFQYNQEDQVDDFKRLKKLIQD-NGLPTIEQVIVLQRQNESYREEL 458

Query: 245 AYSRIEGDHIV 277
              R E + ++
Sbjct: 459 MNERKEKERLL 469


>SB_50009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = +2

Query: 50  KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQD-KNKYNTP--KYRLIVR-- 214
           ++ F K  K   Y +  Q + + R EGK+  +  +R+  +   N  N P  K  + V   
Sbjct: 40  RVTFGKHFKGSLYIESTQRQKEERTEGKSAKHKDERVGKRCILNGLNVPQCKNSIYVNYE 99

Query: 215 -LSNKDVTCQVAYSRIEGDHIV 277
            LS K++TC   +   +GD ++
Sbjct: 100 LLSQKEITCPYTFPEGDGDILI 121


>SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1202

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 233 TCQVAYSRIEGDHIVCAAY 289
           TC V YS   GD +VCAAY
Sbjct: 617 TCHVGYS---GDGVVCAAY 632


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 92  KRYQVKFKRRREGKTDYYARKRL-VVQDKNKY 184
           +RY++ +K+R  G    Y RKRL +V  K  Y
Sbjct: 736 RRYRLLYKKRPSGLQVRYGRKRLPIVWRKRNY 767


>SB_17541| Best HMM Match : DUF638 (HMM E-Value=1.8)
          Length = 680

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +2

Query: 29  FISGIF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKY 199
           FI G   + G   V K K+   +++ K +RR+     +Y R  ++   + K    KY
Sbjct: 228 FIGGAANRFGGWAVGKAKKIADKFKSKAERRKRSIEHFYGRPDMMAHFRGKRFVGKY 284


>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 80  KQYFKRYQVKFKRRREGKTDYYARKRL 160
           K +F+  ++K KR+R  +T+YY +  L
Sbjct: 124 KNWFQNRRMKRKRKRAEETEYYTKLAL 150


>SB_3427| Best HMM Match : Homeobox (HMM E-Value=4e-24)
          Length = 245

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 80  KQYFKRYQVKFKRRREGKTDYYARKRL 160
           K +F+  +VK KR+R  +T+YY +  L
Sbjct: 124 KIWFQNRRVKRKRKRAEETEYYTKLAL 150


>SB_55265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 123 VREKLTTMLANASLSRIKTNTTLQSTD*LYGYPIKMLPVKLHTHALRVITLSVLP 287
           +  + T +LA+  +      +  ++T  +  +P+K  P    +   RVIT +VLP
Sbjct: 421 ITSRTTRVLAHHLVKYYPCTSPSRTTRVITRHPVKYYPCTSPSRTTRVITRNVLP 475


>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
          Length = 1301

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 114 RGVVREKLTTMLANASLSRIKTNTTLQSTD 203
           R  +RE+   M+AN  LS   TN+   S D
Sbjct: 295 RARLREERQWMIANGELSEFNTNSNASSDD 324


>SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21)
          Length = 380

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 173 YPGQRGVCEHSSQ 135
           YPG+RG+ +H SQ
Sbjct: 256 YPGERGITDHGSQ 268


>SB_3426| Best HMM Match : Homeobox (HMM E-Value=3.4e-22)
          Length = 245

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 80  KQYFKRYQVKFKRRREGKTDYYARKRL 160
           K +F+  ++K KR+R  +T+YY +  L
Sbjct: 124 KNWFQNRRMKRKRKRAEETEYYIKLAL 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,002,857
Number of Sequences: 59808
Number of extensions: 189830
Number of successful extensions: 510
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)