Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I12
         (319 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208980-1|BAD92217.1|  303|Homo sapiens ribosomal protein L5 va...   176   1e-44
BC132972-1|AAI32973.1|  297|Homo sapiens ribosomal protein L5 pr...   173   7e-44
BC132970-1|AAI32971.1|  297|Homo sapiens ribosomal protein L5 pr...   173   7e-44
BC109370-1|AAI09371.1|  297|Homo sapiens ribosomal protein L5 pr...   173   7e-44
BC001882-1|AAH01882.1|  101|Homo sapiens RPL5 protein protein.        173   7e-44
AL162740-1|CAI22505.1|  297|Homo sapiens ribosomal protein L5 pr...   173   7e-44
AK222604-1|BAD96324.1|  297|Homo sapiens ribosomal protein L5 va...   173   7e-44
U14966-1|AAA85654.1|  297|Homo sapiens ribosomal protein L5 prot...   171   3e-43
AL162740-2|CAI22506.1|  126|Homo sapiens ribosomal protein L5 pr...    71   7e-13
AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein.        29   4.0  

>AB208980-1|BAD92217.1|  303|Homo sapiens ribosomal protein L5
           variant protein.
          Length = 303

 Score =  176 bits (428), Expect = 1e-44
 Identities = 75/93 (80%), Positives = 89/93 (95%)
 Frame = +2

Query: 41  IF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLS 220
           +F +MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++
Sbjct: 4   LFRRMGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVT 63

Query: 221 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIK 319
           N+D+ CQ+AY+RIEGD IVCAAY+HELP+YG+K
Sbjct: 64  NRDIICQIAYARIEGDMIVCAAYAHELPKYGVK 96


>BC132972-1|AAI32973.1|  297|Homo sapiens ribosomal protein L5
           protein.
          Length = 297

 Score =  173 bits (422), Expect = 7e-44
 Identities = 74/89 (83%), Positives = 86/89 (96%)
 Frame = +2

Query: 53  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 232
           MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query: 233 TCQVAYSRIEGDHIVCAAYSHELPRYGIK 319
            CQ+AY+RIEGD IVCAAY+HELP+YG+K
Sbjct: 61  ICQIAYARIEGDMIVCAAYAHELPKYGVK 89


>BC132970-1|AAI32971.1|  297|Homo sapiens ribosomal protein L5
           protein.
          Length = 297

 Score =  173 bits (422), Expect = 7e-44
 Identities = 74/89 (83%), Positives = 86/89 (96%)
 Frame = +2

Query: 53  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 232
           MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query: 233 TCQVAYSRIEGDHIVCAAYSHELPRYGIK 319
            CQ+AY+RIEGD IVCAAY+HELP+YG+K
Sbjct: 61  ICQIAYARIEGDMIVCAAYAHELPKYGVK 89


>BC109370-1|AAI09371.1|  297|Homo sapiens ribosomal protein L5
           protein.
          Length = 297

 Score =  173 bits (422), Expect = 7e-44
 Identities = 74/89 (83%), Positives = 86/89 (96%)
 Frame = +2

Query: 53  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 232
           MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query: 233 TCQVAYSRIEGDHIVCAAYSHELPRYGIK 319
            CQ+AY+RIEGD IVCAAY+HELP+YG+K
Sbjct: 61  ICQIAYARIEGDMIVCAAYAHELPKYGVK 89


>BC001882-1|AAH01882.1|  101|Homo sapiens RPL5 protein protein.
          Length = 101

 Score =  173 bits (422), Expect = 7e-44
 Identities = 74/89 (83%), Positives = 86/89 (96%)
 Frame = +2

Query: 53  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 232
           MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query: 233 TCQVAYSRIEGDHIVCAAYSHELPRYGIK 319
            CQ+AY+RIEGD IVCAAY+HELP+YG+K
Sbjct: 61  ICQIAYARIEGDMIVCAAYAHELPKYGVK 89


>AL162740-1|CAI22505.1|  297|Homo sapiens ribosomal protein L5
           protein.
          Length = 297

 Score =  173 bits (422), Expect = 7e-44
 Identities = 74/89 (83%), Positives = 86/89 (96%)
 Frame = +2

Query: 53  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 232
           MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query: 233 TCQVAYSRIEGDHIVCAAYSHELPRYGIK 319
            CQ+AY+RIEGD IVCAAY+HELP+YG+K
Sbjct: 61  ICQIAYARIEGDMIVCAAYAHELPKYGVK 89


>AK222604-1|BAD96324.1|  297|Homo sapiens ribosomal protein L5
           variant protein.
          Length = 297

 Score =  173 bits (422), Expect = 7e-44
 Identities = 74/89 (83%), Positives = 86/89 (96%)
 Frame = +2

Query: 53  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 232
           MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query: 233 TCQVAYSRIEGDHIVCAAYSHELPRYGIK 319
            CQ+AY+RIEGD IVCAAY+HELP+YG+K
Sbjct: 61  ICQIAYARIEGDMIVCAAYAHELPKYGVK 89


>U14966-1|AAA85654.1|  297|Homo sapiens ribosomal protein L5
           protein.
          Length = 297

 Score =  171 bits (417), Expect = 3e-43
 Identities = 73/89 (82%), Positives = 85/89 (95%)
 Frame = +2

Query: 53  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 232
           MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query: 233 TCQVAYSRIEGDHIVCAAYSHELPRYGIK 319
            CQ+AY+RIEGD IVCA Y+HELP+YG+K
Sbjct: 61  ICQIAYARIEGDMIVCARYAHELPKYGVK 89


>AL162740-2|CAI22506.1|  126|Homo sapiens ribosomal protein L5
           protein.
          Length = 126

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 27/39 (69%), Positives = 37/39 (94%)
 Frame = +2

Query: 203 LIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIK 319
           +IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YG+K
Sbjct: 1   MIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVK 39


>AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein.
          Length = 4169

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = +2

Query: 50   KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKD 229
            K  F+ + KNK   K+  ++  +R   +     +KR   ++K K     YRL  +L  K 
Sbjct: 4099 KRVFLAIQKNKPISKKEMIQRSKRIYEQLPEVQKKR--EEEKRKSEYKSYRLRAQLYKKR 4156

Query: 230  VTCQVAYSRIEGD 268
            VT Q+   ++  D
Sbjct: 4157 VTNQLLGRKVPWD 4169


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,920,616
Number of Sequences: 237096
Number of extensions: 886606
Number of successful extensions: 5972
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5972
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)