Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I12
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   162   4e-41
AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical ...    29   0.73 
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr...    28   1.3  
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    28   1.3  
AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical ...    27   2.9  
AF040647-10|AAB94993.1|  124|Caenorhabditis elegans Hypothetical...    26   5.1  
Z77666-3|CAB01225.1|  698|Caenorhabditis elegans Hypothetical pr...    26   6.8  
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    26   6.8  
U41025-2|AAM51507.2|  356|Caenorhabditis elegans Hypothetical pr...    26   6.8  
U41025-1|AAM51508.1|  407|Caenorhabditis elegans Hypothetical pr...    26   6.8  
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass...    25   8.9  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    25   8.9  
U00046-4|AAC47043.2|  308|Caenorhabditis elegans Serpentine rece...    25   8.9  
AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...    25   8.9  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  162 bits (394), Expect = 4e-41
 Identities = 72/89 (80%), Positives = 81/89 (91%)
 Frame = +2

Query: 53  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 232
           MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60

Query: 233 TCQVAYSRIEGDHIVCAAYSHELPRYGIK 319
             Q+AYS+IEGD +V +AYSHELPRYG+K
Sbjct: 61  VAQLAYSKIEGDVVVASAYSHELPRYGLK 89


>AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical
           protein Y67H2A.2a protein.
          Length = 553

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +2

Query: 32  ISGIF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYY 145
           I  IF K+G V+  K +Q  +R+Q+KF   RE +T Y+
Sbjct: 405 IYSIFYKLGKVEE-KERQIIERFQIKF-HEREDRTRYF 440


>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
           protein K10G4.5 protein.
          Length = 1251

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +2

Query: 182 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI---VCAAYSHEL 301
           YN P+YR +++L  K   C+     + GD++   +CA +  EL
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETEL 588


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical protein
            W05B2.2 protein.
          Length = 1278

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -3

Query: 299  VHESRQHRQCDHPQCVSMQLDR*HLYWITVQSVGTLECCICFYPGQRGV-CEHSSQF 132
            VH S +H QC HP      LD   +   +++S    E C+    G   V C+H   F
Sbjct: 1084 VHSSIEHLQCPHPYL--NPLDHPQMCITSLKSCSDSETCLKTTSGGNFVCCQHPPSF 1138


>AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical
           protein C29G2.5 protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 KNKYNTPKYRLIVRLSNKDVTCQVAYSRIEG 265
           K+K  TP YRL++ L + D+T  V  S I G
Sbjct: 187 KSKSRTPTYRLMLILGSLDLTGLVISSLIPG 217


>AF040647-10|AAB94993.1|  124|Caenorhabditis elegans Hypothetical
           protein F54D12.2 protein.
          Length = 124

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 282 AQTM*SPSMREYAT*QVTSLLDNRTISRYF 193
           + T+ + S  +Y++ Q T+L DN+T  +YF
Sbjct: 95  SSTLYTQSTDQYSSYQTTTLSDNKTTIQYF 124


>Z77666-3|CAB01225.1|  698|Caenorhabditis elegans Hypothetical
           protein K08E7.3 protein.
          Length = 698

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 152 KRLVVQDKNKYNTPKYRLIVRLSN 223
           KRL  ++K++Y+ P+Y  I R  N
Sbjct: 635 KRLECEEKDRYSGPRYAKITRSRN 658


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 74   KNKQYFKRYQVKFKRRREGKTDYYARKR 157
            KN+Q  K YQ++ +  R+ K D  A  R
Sbjct: 1646 KNQQIIKEYQIECEEARQAKEDIAALLR 1673


>U41025-2|AAM51507.2|  356|Caenorhabditis elegans Hypothetical
           protein C01C4.3a protein.
          Length = 356

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 50  KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARK 154
           + GF+K+ ++KQ  +R  +KF  R + K   + R+
Sbjct: 23  RFGFIKLAEHKQSKQRIAIKFFPRPQTKQADFVRE 57


>U41025-1|AAM51508.1|  407|Caenorhabditis elegans Hypothetical
           protein C01C4.3b protein.
          Length = 407

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 50  KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARK 154
           + GF+K+ ++KQ  +R  +KF  R + K   + R+
Sbjct: 136 RFGFIKLAEHKQSKQRIAIKFFPRPQTKQADFVRE 170


>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform e protein.
          Length = 2702

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 131  KTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 235
            + D Y+R   +V+DKN+    K+R I     K  T
Sbjct: 1132 RQDDYSRVEHIVKDKNRGANLKFRFIESSEEKQTT 1166


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 131  KTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 235
            + D Y+R   +V+DKN+    K+R I     K  T
Sbjct: 5978 RQDDYSRVEHIVKDKNRGANLKFRFIESSEEKQTT 6012


>U00046-4|AAC47043.2|  308|Caenorhabditis elegans Serpentine
           receptor, class v protein1 protein.
          Length = 308

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 161 VVQDKNKYNTPKYRLIVRLSNKDVTCQV 244
           V +++  YNTP +RL + LS  D+  ++
Sbjct: 36  VERNRPPYNTPFFRLCIHLSIADILMEL 63


>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 209 VRLSNKDVTCQVAYSRIEGDHIV 277
           ++ +N D TC + Y   EGD I+
Sbjct: 45  LKCANNDDTCMLKYEENEGDSII 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,418,280
Number of Sequences: 27780
Number of extensions: 141054
Number of successful extensions: 315
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)