Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I12
(319 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S... 126 2e-30
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso... 126 4e-30
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr... 28 1.2
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr... 28 1.2
At5g35753.1 68418.m04282 expressed protein 27 3.6
At1g77300.1 68414.m09002 SET domain-containing protein similar t... 26 4.8
At5g25570.2 68418.m03043 expressed protein 26 6.3
At5g25570.1 68418.m03042 expressed protein 26 6.3
At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger) fa... 26 6.3
At5g43400.1 68418.m05305 expressed protein strong similarity to ... 25 8.3
At5g20250.2 68418.m02411 raffinose synthase family protein / see... 25 8.3
At5g20250.1 68418.m02410 raffinose synthase family protein / see... 25 8.3
At1g51800.1 68414.m05837 leucine-rich repeat protein kinase, put... 25 8.3
>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
ribosomal protein L5 GB:P49625 from [Oryza sativa]
Length = 301
Score = 126 bits (305), Expect = 2e-30
Identities = 55/88 (62%), Positives = 69/88 (78%)
Frame = +2
Query: 53 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 232
M FVK K+ YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 233 TCQVAYSRIEGDHIVCAAYSHELPRYGI 316
Q+ + I GD + +AY+HELP+YG+
Sbjct: 61 VAQIVSASIAGDIVKASAYAHELPQYGL 88
>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
protein L5, rice
Length = 301
Score = 126 bits (303), Expect = 4e-30
Identities = 55/88 (62%), Positives = 69/88 (78%)
Frame = +2
Query: 53 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 232
M FVK K+ YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1 MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 233 TCQVAYSRIEGDHIVCAAYSHELPRYGI 316
Q+ + I GD + +AY+HELP+YG+
Sbjct: 61 VAQIVSASIAGDIVKASAYAHELPQYGL 88
>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 302
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +2
Query: 71 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 244
VKN + + ++ KR+ EGKT+ +K++ +D+ + P + +SN + + ++
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133
>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 304
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +2
Query: 71 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 244
VKN + + ++ KR+ EGKT+ +K++ +D+ + P + +SN + + ++
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133
>At5g35753.1 68418.m04282 expressed protein
Length = 592
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 119 RREGKTDYYARKRL-VVQDKNKYNTPKYRLIVRLSNKDVTCQ 241
RR G+ DYY +KRL Y +Y + + NK ++C+
Sbjct: 79 RRSGEIDYYLQKRLDTFWTVCTYCKVQYEYLRKYVNKRLSCK 120
>At1g77300.1 68414.m09002 SET domain-containing protein similar to
huntingtin interacting protein 1 [Homo sapiens]
GI:12697196; contains Pfam profile PF00856: SET domain
Length = 1759
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 77 NKQYFKRYQVKFKRRREGKTDYYAR 151
N+Q+ KR VKF+R + GK Y R
Sbjct: 1017 NQQFQKRKYVKFERFQSGKKGYGLR 1041
>At5g25570.2 68418.m03043 expressed protein
Length = 99
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 50 KMGFVKVVKNKQYFKRYQVKFKRRREGKTDY-YARKRLVVQDKNKYNTPKYRLIVRLSN 223
+MG ++K + V K E D+ +KR++ ++K+++ Y ++ LSN
Sbjct: 38 QMGMENMLKMVYEIDQNSVGIKEEIEKSKDFAMEKKRILEEEKDQFQKAAYTILDMLSN 96
>At5g25570.1 68418.m03042 expressed protein
Length = 99
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 50 KMGFVKVVKNKQYFKRYQVKFKRRREGKTDY-YARKRLVVQDKNKYNTPKYRLIVRLSN 223
+MG ++K + V K E D+ +KR++ ++K+++ Y ++ LSN
Sbjct: 38 QMGMENMLKMVYEIDQNSVGIKEEIEKSKDFAMEKKRILEEEKDQFQKAAYTILDMLSN 96
>At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger)
family protein contains a Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518
Length = 688
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -3
Query: 311 HSVGVHESRQHRQCDHPQCVSMQLDR 234
HSV + E H DH C +L R
Sbjct: 116 HSVNMEEKFHHSSSDHSNCEESELKR 141
>At5g43400.1 68418.m05305 expressed protein strong similarity to
unknown protein (emb|CAB86628.1)
Length = 655
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 74 KNKQYFKRYQVKFKRRREGKTD 139
KN+ + KR Q KFK +RE K++
Sbjct: 169 KNRVWRKRVQRKFKGKREKKSE 190
>At5g20250.2 68418.m02411 raffinose synthase family protein / seed
imbibition protein, putative (din10) similar to seed
imbibition protein GB:AAA32975 GI:167100 from [Hordeum
vulgare]; contains nonconsensus AT donor splice site at
intron 1; contains Pfam profile PF05691: Raffinose
synthase or seed imbibition protein Sip1; identical to
cDNA seed imbibition protein (din10) partial cds
GI:10834551
Length = 749
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 286 GSTDNVITLNA*VCNLTGNIFIG*PYNQSVLWSVVFVFILDNEAFAS 146
G DNVIT +A +F+G +N+ +V + L N F S
Sbjct: 24 GVPDNVITTSASEAGPVEGVFVGAVFNKEESKHIVPIGTLRNSRFMS 70
>At5g20250.1 68418.m02410 raffinose synthase family protein / seed
imbibition protein, putative (din10) similar to seed
imbibition protein GB:AAA32975 GI:167100 from [Hordeum
vulgare]; contains nonconsensus AT donor splice site at
intron 1; contains Pfam profile PF05691: Raffinose
synthase or seed imbibition protein Sip1; identical to
cDNA seed imbibition protein (din10) partial cds
GI:10834551
Length = 844
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 286 GSTDNVITLNA*VCNLTGNIFIG*PYNQSVLWSVVFVFILDNEAFAS 146
G DNVIT +A +F+G +N+ +V + L N F S
Sbjct: 119 GVPDNVITTSASEAGPVEGVFVGAVFNKEESKHIVPIGTLRNSRFMS 165
>At1g51800.1 68414.m05837 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 894
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 203 LIVRLSNKDVTCQVAYSRIEGD 268
L++R+ +KD+TC V Y EGD
Sbjct: 632 LLLRVHHKDLTCLVGYCE-EGD 652
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,830,258
Number of Sequences: 28952
Number of extensions: 122138
Number of successful extensions: 337
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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