Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I10
(446 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 31 0.081
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 1.3
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 26 2.3
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 3.0
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 25 4.0
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 25 4.0
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 25 5.3
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 25 5.3
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 7.0
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 7.0
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 24 9.3
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 24 9.3
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 24 9.3
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|... 24 9.3
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 24 9.3
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 24 9.3
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 31.1 bits (67), Expect = 0.081
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 182 KSGVDIIVLPPPERSDAETNYDEAVKNLAKAARQADLYVVGH 307
+ G D+ + P +SD + Y++AVK LA + + + ++ H
Sbjct: 739 QKGADVEIAIPTNQSDIDAKYEDAVKLLASPSLEFNSPIINH 780
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.1 bits (57), Expect = 1.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 53 MKSFPSFHPTTPSYGP 6
M S PS+ PT+PSY P
Sbjct: 1572 MPSSPSYSPTSPSYSP 1587
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1583 PSYSPTSPSYSP 1594
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1590 PSYSPTSPSYSP 1601
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1611 PSYSPTSPSYSP 1622
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1618 PSYSPTSPSYSP 1629
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1625 PSYSPTSPSYSP 1636
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1632 PSYSPTSPSYSP 1643
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1639 PSYSPTSPSYSP 1650
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1646 PSYSPTSPSYSP 1657
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1653 PSYSPTSPSYSP 1664
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1660 PSYSPTSPSYSP 1671
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1667 PSYSPTSPSYSP 1678
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1674 PSYSPTSPSYSP 1685
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1681 PSYSPTSPSYSP 1692
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1688 PSYSPTSPSYSP 1699
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1695 PSYSPTSPSYSP 1706
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1702 PSYSPTSPSYSP 1713
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1709 PSYSPTSPSYSP 1720
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1716 PSYSPTSPSYSP 1727
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1723 PSYSPTSPSYSP 1734
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1730 PSYSPTSPSYSP 1741
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 41 PSFHPTTPSYGP 6
PS+ PT+PSY P
Sbjct: 1737 PSYSPTSPSYSP 1748
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 26.2 bits (55), Expect = 2.3
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 382 ISFPIEHQATSDELISILT--ASVLVQMSDDVQISLSCCFRQI 260
+ FP EH A S ++ SILT VQ+ D SCC ++
Sbjct: 56 LQFPDEHLADSGKVASILTNLVEANVQILADTNYG-SCCVDEV 97
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 257 KNLAKAARQADLYVVGHLYENARCQNRDELIRSSLVFNREGNIVSVYRKPL 409
K+ + R++++Y + + R+EL ++LV N ++S KPL
Sbjct: 2513 KSAGRKNRESNVYKIAPINVLLGLLAREELFGNTLVMNTFSELLSTLTKPL 2563
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 4.0
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Frame = +2
Query: 173 DAGKSGVDIIVLPPPERSDAETNY-----------DEAVKNLAKAARQADLYVVGHLYEN 319
+A K+G ++IVLP S T Y + + L+ A+ Y+ G
Sbjct: 70 EAAKNGSNVIVLPEIFNSPYGTGYFNQYAEPIEESSPSYQALSSMAKDTKTYLFGGSIPE 129
Query: 320 ARCQNRDELIRSSLVFNREGNIVSVYRK 403
+ +L +++VF+ G +++V+RK
Sbjct: 130 RK---DGKLYNTAMVFDPSGKLIAVHRK 154
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 4.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 170 HDAGKSGVDIIVLPPPERSDAE 235
H G SG + VLPPP R + E
Sbjct: 78 HVHGASGFEGAVLPPPSRKENE 99
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 25.0 bits (52), Expect = 5.3
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -2
Query: 445 VWDRRCAVRYIIQWFSVHRNNISFPIEHQATSDELISILTASVLVQMSD 299
+WD R + I QW H ++I+ ++ +EL+ + LV + D
Sbjct: 128 LWDVRSEQKLIRQWNDAHNDDITH-LQFHPKDNELLLTGSVDGLVSLLD 175
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 5.3
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 209 PPPER---SDAETNYDEAVKNLAKAARQADLYVVGHLYENARCQNRDE 343
PP R S + ++E +KN +K + Q + YE++ QN DE
Sbjct: 400 PPSARRLPSASSVKFNEKLKNASKQSIQNENKASYSSYEDSEIQNDDE 447
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 24.6 bits (51), Expect = 7.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 389 SVYRKPLNNVANCT 430
+++ PLNN+ NCT
Sbjct: 707 NIFSAPLNNITNCT 720
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 24.6 bits (51), Expect = 7.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 2 HEGRMKESWGGTMERISFIVLCVCIGLSY 88
HE R + W R FI+L VCI Y
Sbjct: 454 HE-RDQRDWSAVCLRFYFIILVVCIASLY 481
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 435 DAVQFATLFNGFLYTETIFPS 373
DA+ FAT + FLY I S
Sbjct: 677 DAISFATTYESFLYMYQILTS 697
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 24.2 bits (50), Expect = 9.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 334 ILTASVLVQMSDDVQISLSCCFRQIFYCL 248
+L A + +MS + L CF+ + YC+
Sbjct: 982 LLKAQIFARMSPSEKNELVSCFQNLNYCV 1010
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 224 SDAETNYDEAVKNLAKAARQADLY 295
S++ N E+ NLA A RQA Y
Sbjct: 765 SNSNQNVQESQSNLAAAERQASTY 788
>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 24.2 bits (50), Expect = 9.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -2
Query: 277 CCFRQIFYCLIVISFSVRPFWWW 209
C + + F C + S PFWW+
Sbjct: 222 CEWIEWFGCYLAAGPSAEPFWWF 244
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 142 RFQWIPTAYP*CWEIGCRYHSITTTRTV 225
RF W T WE+ + H I T ++V
Sbjct: 519 RFVWFGTRDGMLWEVDVQNHHIVTKKSV 546
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 24.2 bits (50), Expect = 9.3
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = +2
Query: 308 LYENARCQNRDELIRSSLVFNREGNIVSVYRKPLNNVANCTASIP 442
L+EN + + SS V + + YRK L T S P
Sbjct: 384 LFENFALEKQTSTDESSQVLSSSIKLFQAYRKTLTQFVRLTRSSP 428
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,294
Number of Sequences: 5004
Number of extensions: 37419
Number of successful extensions: 157
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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