Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I10
(446 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1323 - 26136015-26137876,26138300-26139229,26139922-261400... 33 0.14
02_05_0173 + 26475074-26476108 28 3.9
08_02_0311 - 15635165-15635590,15635777-15638698 27 5.2
07_03_1375 + 26120094-26120651 27 5.2
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 27 5.2
12_02_0735 - 22636835-22639502,22639755-22640734 27 6.9
10_08_1046 + 22542074-22544749,22544837-22545544 27 6.9
10_08_0048 - 14441540-14441620,14442044-14442111,14442275-144424... 27 6.9
04_04_0292 + 24181486-24181515,24181729-24182616,24182702-241828... 27 6.9
03_03_0136 - 14757965-14758579 27 6.9
01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553... 27 6.9
06_01_1183 + 10157813-10159909 27 9.1
06_01_0083 - 659510-661267,661577-662384,662700-663646 27 9.1
>08_02_1323 - 26136015-26137876,26138300-26139229,26139922-26140068,
26140139-26140360,26140513-26140555
Length = 1067
Score = 32.7 bits (71), Expect = 0.14
Identities = 16/62 (25%), Positives = 36/62 (58%)
Frame = +2
Query: 209 PPPERSDAETNYDEAVKNLAKAARQADLYVVGHLYENARCQNRDELIRSSLVFNREGNIV 388
PPP ++DA + D+A + K + +L VG + ++ + ++++E+ ++ N + N V
Sbjct: 926 PPPGKTDAPPSTDDAEETKPK---EEELETVGTVVDDPKEEDKEEIADKEVIVNSDKNHV 982
Query: 389 SV 394
S+
Sbjct: 983 SL 984
>02_05_0173 + 26475074-26476108
Length = 344
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/79 (21%), Positives = 30/79 (37%)
Frame = +2
Query: 170 HDAGKSGVDIIVLPPPERSDAETNYDEAVKNLAKAARQADLYVVGHLYENARCQNRDELI 349
++ G G D + PPP + + + K AA D+ V+G ++ + +
Sbjct: 213 NEVGSRGADFLAPPPPPPPPTTSTHGKR-KRHETAAADPDVEVIGESSKSVKTETYTSPA 271
Query: 350 RSSLVFNREGNIVSVYRKP 406
SSL + S P
Sbjct: 272 SSSLASTTTSTVTSSSTSP 290
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 27.5 bits (58), Expect = 5.2
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -3
Query: 162 GRYPLKSTFLLVSCITPAL 106
G YP S FLLV C PAL
Sbjct: 922 GIYPFTSIFLLVYCFIPAL 940
>07_03_1375 + 26120094-26120651
Length = 185
Score = 27.5 bits (58), Expect = 5.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 21 SRGVERWKGFHLSCFVCASACPIA 92
S +ERW G H SC VC P A
Sbjct: 110 SECLERWLGVHGSCPVCRRELPAA 133
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 27.5 bits (58), Expect = 5.2
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 230 AETNYDEAVKNLAKAARQADLYVVGHLYENARCQNRDELI-RSSLVFNREGNIVSVYRK 403
AE E+ + L + A++ ++ +V + E R N E++ +++V GNI+ ++RK
Sbjct: 167 AEPVDGESTQFLQQLAKKYNMVIVSPILE--RDVNHGEIVWNTAVVIGNHGNIIGIHRK 223
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 165 SGRYPLKSTFLLVSCITPAL 106
+G YP S FLL C+ PA+
Sbjct: 980 AGMYPFTSVFLLAYCLLPAV 999
>10_08_1046 + 22542074-22544749,22544837-22545544
Length = 1127
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 162 GRYPLKSTFLLVSCITPAL 106
G YP S FL+V C PAL
Sbjct: 903 GIYPFTSVFLIVYCFLPAL 921
>10_08_0048 -
14441540-14441620,14442044-14442111,14442275-14442493,
14442506-14444508,14447541-14448410,14448533-14448576,
14449920-14450093
Length = 1152
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -1
Query: 323 ERSRTNVRRRTNQPVLLLSPNFL 255
+ +R + R+++N+P+LL+ PN L
Sbjct: 583 QNNRVDPRKKSNRPLLLMKPNSL 605
>04_04_0292 +
24181486-24181515,24181729-24182616,24182702-24182854,
24183131-24183185,24184860-24185047,24185271-24185351
Length = 464
Score = 27.1 bits (57), Expect = 6.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 258 KIWRKQQDRLICTSSDIC 311
K WRK +++CT D+C
Sbjct: 389 KNWRKDSRKVVCTVDDVC 406
>03_03_0136 - 14757965-14758579
Length = 204
Score = 27.1 bits (57), Expect = 6.9
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +3
Query: 30 VERWKGFHLSCFVCASACPIARTLTTRLV*YKTQAEMSISMDTYRLSMMLGNRVSIS 200
VERW G H SC +C P A + E+ ++M +M G RV +S
Sbjct: 120 VERWLGIHGSCPLCRHEMPPATAAEAE------EEEVVVAMVHGERVVMRGRRVVLS 170
>01_07_0095 +
41053562-41053603,41054609-41054846,41055064-41055312,
41055419-41055469,41056044-41056256,41056305-41056367,
41056422-41056474,41056953-41057067,41057150-41057404,
41057531-41058618
Length = 788
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 215 PERSDAETNYDEAVKNLAKAARQADLYVVGHLYENAR 325
PE D + + + L +A YV+GH+Y AR
Sbjct: 707 PEEDDMDQQVKDELLALVEAKHTGVTYVMGHVYIKAR 743
>06_01_1183 + 10157813-10159909
Length = 698
Score = 26.6 bits (56), Expect = 9.1
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 290 LYVVGHLYENARCQNRDELIRSSLVFNREGNIVSVYRKPLNNVANCTASI 439
L +VG N C R + R + NRE V V RK V + +ASI
Sbjct: 616 LLLVGLSCANPNCDERPAMRRVVQILNREAEPVPVPRKKPLLVFSSSASI 665
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 162 GRYPLKSTFLLVSCITPAL 106
G YP S FL+V C PAL
Sbjct: 948 GIYPFTSIFLIVYCFLPAL 966
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,855,527
Number of Sequences: 37544
Number of extensions: 247936
Number of successful extensions: 765
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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