Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I10
(446 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25556| Best HMM Match : rve (HMM E-Value=2.8e-17) 31 0.43
SB_16288| Best HMM Match : Dabb (HMM E-Value=3) 31 0.57
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05) 30 1.0
SB_45503| Best HMM Match : LEA_4 (HMM E-Value=0.4) 29 1.3
SB_17161| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_45624| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12) 29 2.3
SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012) 28 3.1
SB_48443| Best HMM Match : RecQ5 (HMM E-Value=6.2) 27 7.1
SB_57168| Best HMM Match : DUF845 (HMM E-Value=4.1) 27 9.3
SB_45598| Best HMM Match : Peptidase_C5 (HMM E-Value=0.3) 27 9.3
>SB_25556| Best HMM Match : rve (HMM E-Value=2.8e-17)
Length = 735
Score = 31.1 bits (67), Expect = 0.43
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = -3
Query: 444 SGIDAVQFATLFNGFLYTETIFPSRLNTKLLLMSSSLF*QRAFSYKCP 301
+G D +Q+ TLF F +TET ++ N K+ M+ F +R S+K P
Sbjct: 137 NGNDEMQWRTLFEMFAHTETDKQAKTNGKMNGMAKD-FAKRRVSFKLP 183
>SB_16288| Best HMM Match : Dabb (HMM E-Value=3)
Length = 264
Score = 30.7 bits (66), Expect = 0.57
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 242 YDEAVKNLAKAARQADLYVVGHLYENARCQNRDELIRSSL 361
Y+EA+ +A RQAD+ +V YE+ Q +DE +++ L
Sbjct: 158 YNEALAKVAPYLRQADIAIVN--YESPFIQKKDETVKNRL 195
>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
Length = 905
Score = 29.9 bits (64), Expect = 1.0
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +2
Query: 197 IIVLPPPERSDAETNYDEAVKNLAKAARQADLYVVGHLYENARCQNRDELIRSSLVFNRE 376
+++ PP DA + +AVKN+ + +D + + R QN + + + F R
Sbjct: 468 VVIGPPGSAPDAAADQSDAVKNVPMKRKFSDTLEIKKI---PRDQN--NITKLNEYFKRF 522
Query: 377 GNIVSVYRKPLNNVA 421
GNIV++ + +N A
Sbjct: 523 GNIVNIQPQQKDNSA 537
>SB_45503| Best HMM Match : LEA_4 (HMM E-Value=0.4)
Length = 117
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 92 EDTYYKAGVIQDTSRNVDFNGYL---PLIHDAGKSGVDIIVLPPPER 223
+DT +K QDT G+ P I GK GV I++PPPE+
Sbjct: 66 QDTRHKT---QDTRHGTQDTGHRTQDPSILKMGKKGVVTIIIPPPEQ 109
>SB_17161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 80 LSYCEDTYYKAGVIQDTSRNVDFNGYLPLIHDAGK 184
L Y + TY+K + V+F+G P +HD GK
Sbjct: 612 LFYAKFTYFKDLIAVKGMEKVNFSGGEPFLHDRGK 646
>SB_45624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 20 ESWGGTMERISFIVLCVCIGLSYCEDTYYKAGVIQDTSRNVDFNGYL 160
ES G T + + ++LC Y +DT + G + DT + NGY+
Sbjct: 40 ESTGATRKIVKTVLLCQIGANVYVDDTDERNGYVDDTDKR---NGYV 83
>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
Length = 979
Score = 28.7 bits (61), Expect = 2.3
Identities = 23/87 (26%), Positives = 38/87 (43%)
Frame = +2
Query: 92 EDTYYKAGVIQDTSRNVDFNGYLPLIHDAGKSGVDIIVLPPPERSDAETNYDEAVKNLAK 271
E ++++ + Q T + G++ ++D G S VL R AE + + L
Sbjct: 119 EFSFFEQEIGQVTGLILTATGHVTAMNDVGDSRAAAEVLLDDARKFAEKSQGHIERALGL 178
Query: 272 AARQADLYVVGHLYENARCQNRDELIR 352
AAR D+ GH Y + R E +R
Sbjct: 179 AARGIDMAENGH-YSRDTIRLRSEELR 204
>SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)
Length = 550
Score = 28.3 bits (60), Expect = 3.1
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -3
Query: 231 ASDRSGGGNTMISTPDFPASWISGRYPLKSTFLLVSCITPAL**VSSQ*DKPMHTQSTIN 52
A DR+ + D P SW S K+ CI P V+ ++P+H T+N
Sbjct: 375 ALDRNVKAGFLAKVTD-PTSWCSNELIRKTPKKFRVCIDPRSQTVNKAINRPVHQMPTLN 433
Query: 51 EIL 43
E L
Sbjct: 434 EQL 436
>SB_48443| Best HMM Match : RecQ5 (HMM E-Value=6.2)
Length = 332
Score = 27.1 bits (57), Expect = 7.1
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = +2
Query: 119 IQDTSRNVDFNGYLPLIHDAGKSGVDIIVLPPPERSDAETNYDEAVKNLAKAARQADLYV 298
I + + D N Y H + +S DI+ PP E+S T +D + + L+V
Sbjct: 239 IPPSKSDTDLNSYSKDAHSSLES--DIVSTPPEEKSCVLTTHD--IAEMTSNGESDYLFV 294
Query: 299 VGHLYENA 322
H A
Sbjct: 295 AAHTIRKA 302
>SB_57168| Best HMM Match : DUF845 (HMM E-Value=4.1)
Length = 132
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -2
Query: 355 TSDELISILTASVLVQMSDDVQISLSCCFRQIFY 254
T+ +I I+T SV+ ++D++ ISLS + FY
Sbjct: 86 TTTIIIIIITISVITIINDNIIISLSLNHHRYFY 119
>SB_45598| Best HMM Match : Peptidase_C5 (HMM E-Value=0.3)
Length = 604
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 131 SRNVDFNGYLPLIHDAGKSGVDIIVLPPP 217
SR FNGY L++D K G + L PP
Sbjct: 344 SRREFFNGYTLLVYDMTKPGERWVGLHPP 372
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,836,035
Number of Sequences: 59808
Number of extensions: 293204
Number of successful extensions: 768
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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