Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I10
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75955-9|CAB00123.1|  406|Caenorhabditis elegans Hypothetical pr...    30   0.67 
AC006795-2|AAF59493.3|  421|Caenorhabditis elegans Hypothetical ...    29   2.0  
U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z49913-6|CAA90145.2|  460|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z75955-9|CAB00123.1|  406|Caenorhabditis elegans Hypothetical
           protein R07B7.14 protein.
          Length = 406

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 203 VLPPPERSDAETNYDEAVKN-LAKAARQADLYVVGHLYENARCQNRDELIRSSLVFNREG 379
           +LP  E +D ET  D   KN L K  R      VG+ Y+ A C       R +++  R  
Sbjct: 11  ILPDIEITDEETKCDPNTKNILPKQCRICRNPAVGYHYDVASCNGCKAFFRRTVITGRLP 70

Query: 380 N 382
           N
Sbjct: 71  N 71


>AC006795-2|AAF59493.3|  421|Caenorhabditis elegans Hypothetical
           protein Y50D4B.6 protein.
          Length = 421

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 262 IFYCLIVISFSVRPFWWW*YY 200
           IFYC++VI+ SV  ++ W +Y
Sbjct: 9   IFYCIVVIALSVLFYYVWKFY 29


>U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical
           protein F10D7.1 protein.
          Length = 656

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 122 QDTSRNVDFNGYLPLIHDAGKSGVDII---VLPPPERSDAETNYDEAVKNLAKA 274
           Q+TS +   N       DA  S  D+I   V  PPE SDA T  D +  N  +A
Sbjct: 474 QNTSNSDSINNSTLSSEDADDSSTDLISSVVSVPPESSDAVTTPDSSDFNEPEA 527


>Z49913-6|CAA90145.2|  460|Caenorhabditis elegans Hypothetical
           protein ZK938.6 protein.
          Length = 460

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 23/75 (30%), Positives = 33/75 (44%)
 Frame = +2

Query: 50  SFIVLCVCIGLSYCEDTYYKAGVIQDTSRNVDFNGYLPLIHDAGKSGVDIIVLPPPERSD 229
           S + + + IG  Y     +   V  +TSRN+  N     + D    GVDI     P+ SD
Sbjct: 172 STLKVMISIGGQY-NSGEFSGLVSNETSRNLFVNSIATFVRDYDIDGVDIF-WTWPKHSD 229

Query: 230 AETNYDEAVKNLAKA 274
            E NY   ++ L  A
Sbjct: 230 -ENNYLMFIRELRYA 243


>U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical
           protein T10E10.3 protein.
          Length = 393

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = -2

Query: 439 DRRCAVRYIIQWFSVHRNNISF 374
           +R+CA  Y + WF+VH+++++F
Sbjct: 68  ERKCASEYHM-WFAVHKHHLAF 88


>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 57  SCFVCASACPIARTLTTRLV*YKTQAEMSISMDTYRLSMML 179
           +C +C SACP A+  TT  + Y   A M IS     + M+L
Sbjct: 22  ACSLCCSACPGAKNSTTTRIMY---ALMLISATFMAVVMLL 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,898,582
Number of Sequences: 27780
Number of extensions: 214788
Number of successful extensions: 737
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)