Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I10
         (446 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin...    31   0.47 
At2g21380.1 68415.m02544 kinesin motor protein-related                 31   0.47 
At1g26800.1 68414.m03266 zinc finger (C3HC4-type RING finger) fa...    29   1.4  
At5g13630.1 68418.m01580 magnesium-chelatase subunit chlH, chlor...    29   1.9  
At4g15490.1 68417.m02367 UDP-glucoronosyl/UDP-glucosyl transfera...    28   2.5  
At1g02730.1 68414.m00226 cellulose synthase family protein simil...    28   2.5  
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    27   5.8  
At4g13985.1 68417.m02163 F-box family protein contains F-box dom...    27   5.8  
At2g36310.1 68415.m04457 inosine-uridine preferring nucleoside h...    27   5.8  
At5g16910.1 68418.m01982 cellulose synthase family protein simil...    27   7.6  

>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
            motor protein - Ustilago maydis, PID:g2062750; identical
            to cDNA   MKRP2 mRNA for kinesin-related protein
            GI:16902293, kinesin-related protein [Arabidopsis
            thaliana] GI:16902294
          Length = 1055

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 143  RHFCLCLVLHQPCSKCPRNRT 81
            RHFCLC      CS+CP  RT
Sbjct: 1024 RHFCLCKSCSLACSECPICRT 1044


>At2g21380.1 68415.m02544 kinesin motor protein-related
          Length = 1058

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 143  RHFCLCLVLHQPCSKCPRNRT 81
            RHFCLC      CS+CP  RT
Sbjct: 1027 RHFCLCKSCSLACSECPICRT 1047


>At1g26800.1 68414.m03266 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 204

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 30  VERWKGFHLSCFVCASACPI 89
           +E+W GFH SC VC    P+
Sbjct: 140 IEKWLGFHGSCPVCRYEMPV 159


>At5g13630.1 68418.m01580 magnesium-chelatase subunit chlH,
           chloroplast, putative / Mg-protoporphyrin IX chelatase,
           putative (CHLH) nearly identical to magnesium chelatase
           subunit GI:1154627 from [Arabidopsis thaliana]; contains
           Pfam profile: PF02514 CobN/magnesium chelatase family
           protein
          Length = 1381

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 233 ETNYDEAVKNLAKAARQADLYVVGHLYENARCQN 334
           +++  EAV++L K +R A   VVG+L E  R +N
Sbjct: 90  QSSLSEAVQSLNKTSRFASYEVVGYLVEELRDKN 123


>At4g15490.1 68417.m02367 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase ;simalr to
           UDP-glucose:sinapate glucosyltransferase GI:9794913 from
           [Brassica napus]
          Length = 479

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +2

Query: 17  KESWGGTMERISFIVLCVC--IGLSYCEDTYYKAGVIQDTSRNVDFNGYLPLIHDAGKSG 190
           ++ WG  M + + I   V   +GL +    ++  G   D  +  DF+ + P +   GK  
Sbjct: 43  EKPWGKKMRQANKIQDGVLKPVGLGFIRFEFFSDGFADDDEKRFDFDAFRPHLEAVGKQE 102

Query: 191 VDIIV 205
           +  +V
Sbjct: 103 IKNLV 107


>At1g02730.1 68414.m00226 cellulose synthase family protein similar to
            cellulose synthase catalytic subunit [gi:13925881] from
            Nicotiana alata, cellulose synthase-4 [gi:9622880] from
            Zea mays
          Length = 1181

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 162  GRYPLKSTFLLVSCITPAL 106
            G YP  S FL+V CI PA+
Sbjct: 959  GMYPFTSLFLIVYCILPAI 977


>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
            subunit (RPB205) (RPII) (RPB1) nearly identical to
            P|P18616 DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -1

Query: 41   PSFHPTTPSYGP 6
            PS+ PT+PSYGP
Sbjct: 1711 PSYSPTSPSYGP 1722


>At4g13985.1 68417.m02163 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 459

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 179 GKSGVDIIVLPPPERSDAETNYDEAVKNLAKAARQADLYVVGHLYENA 322
           GK G +I  LP P R      Y +  K +A  A +  L +V +  EN+
Sbjct: 374 GKEGANI--LPGPRRFLTSLEYVKIAKPMAAEASEIKLKLVSYFLENS 419


>At2g36310.1 68415.m04457 inosine-uridine preferring nucleoside
           hydrolase family protein similar to Chain A, Crystal
           Structure Of Nucleoside Hydrolase From Leishmania
           MajorGI:8569431; contains Pfam profile PF01156:
           Inosine-uridine preferring nucleoside hydrolase
          Length = 336

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 152 GYLPLIHDA--GKSGVDIIVLPPPERSDAETNYDEAV-KNLAKAARQADLYVVGHLYENA 322
           G +P + D   GK+G+  + LPPP R  +E +  E + + + +   +  +  +G L   A
Sbjct: 92  GGIPRVADFVHGKNGLGDVSLPPPSRKKSEKSAAEFLDEKVEEYPGEVTILALGPLTNLA 151

Query: 323 RCQNRDELIRSSL 361
               RD    S +
Sbjct: 152 LAIKRDSSFASKV 164


>At5g16910.1 68418.m01982 cellulose synthase family protein similar
           to gi:2827143 cellulose synthase catalytic subunit,
           Arabidopsis thaliana, gi:9622886 cellulose synthase-7
           from Zea mays
          Length = 1145

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 162 GRYPLKSTFLLVSCITPAL 106
           G YP  S FL+V C  PAL
Sbjct: 923 GIYPFTSIFLIVYCFLPAL 941


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,255,280
Number of Sequences: 28952
Number of extensions: 198454
Number of successful extensions: 605
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)