Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I09
(257 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 29 0.13
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces... 28 0.18
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy... 28 0.24
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 24 2.9
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 24 2.9
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 24 2.9
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 24 3.8
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 23 5.1
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 23 5.1
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 23 5.1
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 23 5.1
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 23 5.1
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos... 23 6.7
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 23 8.9
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 23 8.9
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 8.9
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 28.7 bits (61), Expect = 0.13
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 128 VAKLREVLEDRLQEIKR-AKTWKHERVLTSPQDTKVKVQGSDGE 256
+ K E+L+ + ++R K W H RVLT D + +V+ ++ E
Sbjct: 545 IEKAAELLDQPKEIVERHLKFWLHHRVLTDIGDDRYRVRETEAE 588
>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 298
Score = 28.3 bits (60), Expect = 0.18
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +2
Query: 29 QLLRNGKKRVSCLVFNNVQTRQLHELKNKERAGVAKLREVLEDRLQEIKRAKTWKHERVL 208
+LLR+ K++ + N+ ++R+ + K E AKL E+ K +VL
Sbjct: 44 KLLRSLGKQIIFVSNNSTKSRETYMNKINEHGIAAKLEEIYPSAYSSATYVK-----KVL 98
Query: 209 TSPQDTKVKVQGSDG 253
P D KV V G G
Sbjct: 99 KLPADKKVFVLGEAG 113
>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 27.9 bits (59), Expect = 0.24
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 140 REVLEDRLQEIKRAKTWKHERVLTSPQDTKVKVQGSDG 253
REV+ED ++++ W E L + D +K +G G
Sbjct: 61 REVVEDVFAKVEQEHPWVKETKLVAKPDQLIKRRGKSG 98
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 24.2 bits (50), Expect = 2.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 257 ILHRNLVPSPSYPEVKLTHVHVSTF*LFLSPEGDLLKLPEALQLL 123
++HR SP+ E K H V T L+P L ++ E+L L
Sbjct: 129 LVHRASSTSPAIIEGKFAHAVVPTAEQPLAPMDTLKEITESLHTL 173
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 24.2 bits (50), Expect = 2.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 35 LRNGKKRVSCLVFNNVQTRQLHELKNKERAGVAKLREVLEDRLQEIKRA 181
LR +R +FN V+T QL N+E ++ R E +++E+ +A
Sbjct: 150 LRRIARRGVVQLFNAVRTAQLQSSLNRE--NISGGRTAREQKVKELSKA 196
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 24.2 bits (50), Expect = 2.9
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 79 CSNTSATRVEKQGTCRSCKASGSFR 153
C T T + CRSC SG+ R
Sbjct: 283 CGGTGTT-IPPNSACRSCMGSGTVR 306
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 23.8 bits (49), Expect = 3.8
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +1
Query: 25 LTATAQW*KTCFLFSIQQCSNTSATRVEKQGTCRSCKAS 141
L+ A W ++C L + S ++ + + T SC +S
Sbjct: 344 LSKIADWLRSCRLTKPESSSVPPSSSISRSSTIHSCTSS 382
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 23.4 bits (48), Expect = 5.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 38 RNGKKRVSCLVFNNVQTRQLHELKNKERAGVAKLREVLEDRLQ 166
R K+ + L + ++ E KE + KLRE+ + RLQ
Sbjct: 184 RASKREMERLERDQELRNKIEERNKKELETIEKLRELAKARLQ 226
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 23.4 bits (48), Expect = 5.1
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +2
Query: 77 NVQTRQLHELKNKERAGVAKLREVLEDRLQEIKRAKTWKHE 199
++ T +E+ N GV RE+++ + E WK E
Sbjct: 495 DLDTNSQYEIPNAVTWGVFPNREIIQPTIVESTSFLAWKDE 535
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 23.4 bits (48), Expect = 5.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 113 KERAGVAKLREVLEDRLQEIKRAKTWKHERVLTSPQDTKVKV 238
KE+ V R++LE RLQ + + K + E + S D K K+
Sbjct: 177 KEKTKVQGQRDLLEQRLQGLMK-KLTEVESLTVSLNDEKNKL 217
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 23.4 bits (48), Expect = 5.1
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = -1
Query: 158 DLLKLPEALQLLHVPCFSTRVADVFEHC*ILNKKHVFYHCAVAVSAAPPWPR 3
D+ P ++LL+ + +A++ + ++ K F H V V + W R
Sbjct: 297 DISAAPPLIELLNRSSWLKHLANILQGAVLIVKTVHFRHAHVLVHCSDGWDR 348
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 23.4 bits (48), Expect = 5.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 119 RAGVAKLREVLEDRLQE 169
RAGV K ++++ +RLQE
Sbjct: 1258 RAGVVKAKDLIFERLQE 1274
>SPBC13G1.03c |pex14||peroxisomal membrane anchor
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 23.0 bits (47), Expect = 6.7
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 83 QTRQLHELKNKERAGVAKLREVLEDRLQEIKRAKTWKHERVLTSPQD 223
QTR+L E K++ + + LE+ L +KR + + QD
Sbjct: 130 QTRKLSERTEKQQDELDIALDDLEETLNTLKRTSENRDREIARISQD 176
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 22.6 bits (46), Expect = 8.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 197 HVSTF*LFLSPEGDLLKLPEALQLLHVPCFSTRVADV 87
H+S+F ++L P+ LL LQL+ F V V
Sbjct: 406 HLSSFQIYLKPKDYLLDPKPLLQLICASFFGFPVGFV 442
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 22.6 bits (46), Expect = 8.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 173 KRAKTWKHERVLTSPQDTKV 232
K K WK V T+P++T V
Sbjct: 20 KSKKDWKDASVETTPRETSV 39
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 22.6 bits (46), Expect = 8.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 44 GKKRVSCLVFNNVQTRQLHELKNKERAGVAKLREVLEDRL 163
G K VS V NN+ LH+ R +L+++ ++L
Sbjct: 959 GGKFVSPAVSNNISKDDLHKTTGLTRRPTRRLKQMHWEKL 998
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,039,172
Number of Sequences: 5004
Number of extensions: 17528
Number of successful extensions: 52
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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