Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I09
(257 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0884 - 8675591-8675645,8675718-8675761,8675909-8676028,867... 32 0.073
07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-13... 27 2.1
05_06_0164 + 26085766-26085799,26086908-26087030,26087406-260875... 27 2.1
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879 27 2.1
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 27 2.7
05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111 26 3.6
02_05_0247 - 27141859-27142887 26 3.6
12_02_0144 + 14364255-14364881,14364898-14364957 26 4.8
09_02_0181 - 5425833-5426527,5426667-5429397 25 6.3
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 25 6.3
01_05_0290 - 20487105-20487113,20487171-20487213,20488336-204884... 25 6.3
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869... 25 6.3
03_05_1154 + 30803983-30806047,30806152-30806968,30807362-308076... 25 8.4
>08_01_0884 -
8675591-8675645,8675718-8675761,8675909-8676028,
8676148-8676225,8676401-8676511,8676765-8676842,
8676934-8676999,8677098-8677175,8677256-8677318,
8677452-8677541,8677616-8677712,8679078-8679175,
8679600-8679729,8679867-8680042
Length = 427
Score = 31.9 bits (69), Expect = 0.073
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = +2
Query: 14 AALRSQL--LRNGKKRVSCLVFNN--VQTRQLHELKNKERAGVAKLREVLEDRLQEIKR 178
A L++Q+ L+ + +V N V+T+Q+HE+K KE+ + KL+E L L E K+
Sbjct: 173 ATLKAQIDKLQQERDEFQKMVIGNQQVRTQQIHEMKKKEKEYI-KLQEKLNQVLMEKKK 230
>07_01_0020 -
127855-129156,129240-129365,129811-129865,130047-130177
Length = 537
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 119 RAGVAKLREVLEDRLQEIKRAKTWKHERVLTSPQDTKVKVQ 241
R +RE +E+ + ++ A+ W+ ERV D K ++
Sbjct: 248 RRECVSMREEMEEERRMLQMAEVWREERVQMKLSDAKAVLE 288
>05_06_0164 +
26085766-26085799,26086908-26087030,26087406-26087525,
26087632-26087696
Length = 113
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +2
Query: 125 GVAKLREVLEDRLQEIKRAKTWKHERVLTSPQDTKVK 235
G A +++ +++K+ K WKH + +T Q +K++
Sbjct: 2 GCAGSTPKVDENSKKLKKPKPWKHTQAITPTQLSKMR 38
>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
Length = 696
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 134 KLREVLEDRLQEIKRAKTWKHERVLTSPQDTKV 232
KLRE +++ + ++ A+ W+ ERV D K+
Sbjct: 354 KLREEVDEERKMLQMAEVWREERVQMKLVDAKL 386
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +2
Query: 5 EAMAALRSQLLRNGKKRVSCLVFNNVQTRQLHELKNKERAGVAKLREVLEDRLQEIKRAK 184
E L + LL K+ + ++ +T+Q +E K+ A V + ++L+D L+ +
Sbjct: 1175 ETATTLETSLLAE-KQHSAAIMSQLAETKQGNEELQKKLADVNRTNDILQDSLKRFEENV 1233
Query: 185 TWKHERVLTSPQD 223
T + L Q+
Sbjct: 1234 TTRDALYLAERQE 1246
>05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111
Length = 677
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 134 KLREVLEDRLQEIKRAKTWKHERVLTSPQDTKV 232
K+R+ +E+ + ++ A+ W+ ERV D K+
Sbjct: 340 KMRDEVEEEKKMLQMAEVWREERVQMKLVDAKL 372
>02_05_0247 - 27141859-27142887
Length = 342
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 78 LLNTKQETRFLPLRSSCERSAAMAS 4
L +T + TRFLP+R+S +AA S
Sbjct: 15 LPSTSKSTRFLPIRASSAAAAASPS 39
>12_02_0144 + 14364255-14364881,14364898-14364957
Length = 228
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +2
Query: 68 VFNNVQTRQLHELKNKERAGVAKLREVLEDRLQEIKRAKTWK 193
+F Q R++ L+N+ER ++ + + RL++ K + W+
Sbjct: 138 IFTKNQKRRVQRLRNRER--FQEVEQEINHRLKKTKPRQEWR 177
>09_02_0181 - 5425833-5426527,5426667-5429397
Length = 1141
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 69 YSTMFKHVSYTS*KTRNVQELQSFGK 146
Y+ +FKH Y TRNV+ L+ K
Sbjct: 17 YNAIFKHALYPFKVTRNVENLEKATK 42
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 53 RVSCLVFNNVQTRQLHELKNKERAGVAKLREVLEDRLQE 169
R + + V+ RQL + NKE L EVLE+ ++E
Sbjct: 270 RTAPVANKTVEYRQLEFIPNKEEEPPQPLPEVLEEPVKE 308
>01_05_0290 -
20487105-20487113,20487171-20487213,20488336-20488412,
20489096-20489163,20489266-20489456,20490687-20490798,
20490892-20490943,20491984-20492076,20493065-20493211,
20493381-20493410,20493764-20493862,20495188-20495322,
20495420-20495498,20495989-20496064,20496345-20496423,
20496513-20496547,20497185-20497259,20497405-20497804
Length = 599
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/58 (20%), Positives = 24/58 (41%)
Frame = +2
Query: 80 VQTRQLHELKNKERAGVAKLREVLEDRLQEIKRAKTWKHERVLTSPQDTKVKVQGSDG 253
+ R LH + + E+L++ + E+ T+ T+P+D + DG
Sbjct: 141 INPRFLHSNATSHKWAFGAIAELLDNAIDEVNTGATFVRVNEFTNPRDGSSSLLIQDG 198
>01_01_1098 -
8691312-8692430,8692640-8693509,8694522-8696105,
8696199-8696258,8696336-8696414,8696494-8696555,
8697129-8697204,8697367-8697419,8698181-8698270,
8698411-8698458
Length = 1346
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 128 VAKLREVLEDRLQEIKRAKTWKHERVLTSPQDTKVKVQGSDGE 256
+ ++ V + LQ K + ++ S DT+VK++ +D E
Sbjct: 344 ILRMSRVAKRNLQREKDKENYRRHPTEASENDTEVKIENNDME 386
>03_05_1154 +
30803983-30806047,30806152-30806968,30807362-30807655,
30808214-30808451
Length = 1137
Score = 25.0 bits (52), Expect = 8.4
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +2
Query: 41 NGKK---RVSCLVFNNVQTRQLHELKNKERAGVAKLREVLEDRLQEIKRAKTWKHERVLT 211
NG+K R S F V + ++ E + L+ +L LQ+ K + ++T
Sbjct: 543 NGRKMHPRSSFKAFLEVVKWRSVPWEDVEMDAIHSLQLILRGSLQDEDANKNNNAKSIVT 602
Query: 212 SPQDTKVKVQG 244
+P D K+QG
Sbjct: 603 APSDDMKKIQG 613
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,973,306
Number of Sequences: 37544
Number of extensions: 116984
Number of successful extensions: 357
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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