Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I09
         (257 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.20 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   0.35 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   0.46 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   3.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   4.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   9.8  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 0.20
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -1

Query: 176 FLSPEGDLLKLPEALQLLHVPCFSTRVADVFEHC*ILNKKHVFY 45
           +LS E D+L++P +    + PC +   +D+  +   + +K +FY
Sbjct: 210 YLSVEWDILEVPASRNEEYYPCCTEPYSDITFNI-TMRRKTLFY 252


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 0.35
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 38  RNGKKRVSCLVFNNVQTRQL 97
           RNG+  V  L F  +Q RQL
Sbjct: 56  RNGRHNVHSLAFGAIQLRQL 75


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 0.46
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 170 SPEGDLLKLPEALQLLHVPCFSTRVADVFEHC*ILNKKHVFY 45
           S E D+L +P      + PC      D+F +   L +K +FY
Sbjct: 198 SVEWDILGVPAERHKKYYPCCDEPYPDIFFNI-TLRRKTLFY 238


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 3.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 71  ILNKKHVFYH 42
           +LNK+HV +H
Sbjct: 188 VLNKQHVHFH 197


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 125  GVAKLREVLEDRLQEIKRAKTWKHERV 205
            G+A  R     RL EIKR    ++ +V
Sbjct: 976  GIAPFRGFWHHRLAEIKRRPDLEYGKV 1002


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 205 HTFMFPRFSSFY 170
           H F++P  SS Y
Sbjct: 370 HLFLYPEVSSTY 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,272
Number of Sequences: 438
Number of extensions: 1132
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4636803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)