Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I09
(257 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57410.1 68418.m07172 expressed protein 32 0.060
At1g16960.1 68414.m02059 expressed protein 31 0.11
At2g18876.2 68415.m02202 expressed protein 30 0.18
At2g18876.1 68415.m02201 expressed protein 30 0.18
At3g20350.1 68416.m02578 expressed protein 28 0.74
At1g50660.1 68414.m05696 expressed protein similar to liver stag... 28 0.74
At1g68790.1 68414.m07863 expressed protein 27 1.7
At3g29375.1 68416.m03690 XH domain-containing protein contains P... 27 2.3
At5g26610.2 68418.m03181 D111/G-patch domain-containing protein ... 26 3.0
At5g26610.1 68418.m03180 D111/G-patch domain-containing protein ... 26 3.0
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 26 3.0
At4g27190.1 68417.m03905 disease resistance protein (NBS-LRR cla... 26 4.0
At2g41070.3 68415.m05073 basic leucine zipper transcription fact... 26 4.0
At2g41070.2 68415.m05072 basic leucine zipper transcription fact... 26 4.0
At2g41070.1 68415.m05071 basic leucine zipper transcription fact... 26 4.0
At3g56850.1 68416.m06322 ABA-responsive element-binding protein ... 25 5.2
At2g20290.1 68415.m02370 myosin, putative similar to myosin (GI:... 25 5.2
At1g55590.1 68414.m06363 F-box family protein ; similar to SKP1... 25 5.2
At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05... 25 5.2
At4g37320.1 68417.m05285 cytochrome P450 family protein 25 6.9
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 25 6.9
At2g45950.1 68415.m05713 SKP1 family protein similar to glycopro... 25 6.9
At1g24560.1 68414.m03090 expressed protein 25 6.9
At1g11690.1 68414.m01342 hypothetical protein 25 6.9
At5g50340.1 68418.m06235 DNA repair protein-related similar to R... 25 9.1
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea... 25 9.1
At4g03000.2 68417.m00408 expressed protein contains similarity t... 25 9.1
At4g03000.1 68417.m00407 expressed protein contains similarity t... 25 9.1
At3g58410.1 68416.m06510 meprin and TRAF homology domain-contain... 25 9.1
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei... 25 9.1
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 25 9.1
At2g34860.1 68415.m04280 chaperone protein dnaJ-related contains... 25 9.1
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 25 9.1
>At5g57410.1 68418.m07172 expressed protein
Length = 373
Score = 31.9 bits (69), Expect = 0.060
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = +2
Query: 14 AALRSQL--LRNGKKRVSCLVFNN--VQTRQLHELKNKERAGVAKLREVLEDRLQEIKR 178
AAL+SQ+ L+ + +V N V+ +Q+HE+K KE+ + KL+E L L E K+
Sbjct: 128 AALKSQIEKLQQERDEFQRMVIGNQQVKAQQIHEMKKKEKDYI-KLQERLNQVLMEKKK 185
>At1g16960.1 68414.m02059 expressed protein
Length = 114
Score = 31.1 bits (67), Expect = 0.11
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +2
Query: 125 GVAKLREVLEDRLQEIKRAKTWKHERVLTSPQDTKVK 235
G + R + E + ++I+R KTWKH + ++ + T+++
Sbjct: 2 GCSSSRTIAEGKKEKIRRPKTWKHPQPISRDELTQMR 38
>At2g18876.2 68415.m02202 expressed protein
Length = 284
Score = 30.3 bits (65), Expect = 0.18
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = +2
Query: 14 AALRSQLLRNGKKR--VSCLVFNN--VQTRQLHELKNKERAGVAKLREVLEDRLQEIKR 178
AAL++Q + K+R +V N V+T+QLHE K KE+ + KL+E L L E K+
Sbjct: 34 AALKTQNEKLQKERDEFQRMVIANQQVKTQQLHETKKKEKEYI-KLQERLNQVLMEKKK 91
>At2g18876.1 68415.m02201 expressed protein
Length = 382
Score = 30.3 bits (65), Expect = 0.18
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = +2
Query: 14 AALRSQLLRNGKKR--VSCLVFNN--VQTRQLHELKNKERAGVAKLREVLEDRLQEIKR 178
AAL++Q + K+R +V N V+T+QLHE K KE+ + KL+E L L E K+
Sbjct: 132 AALKTQNEKLQKERDEFQRMVIANQQVKTQQLHETKKKEKEYI-KLQERLNQVLMEKKK 189
>At3g20350.1 68416.m02578 expressed protein
Length = 673
Score = 28.3 bits (60), Expect = 0.74
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 137 LREVLEDRLQEIKRAKTWKHERVLTSPQDTKVKVQ 241
LRE ++D + ++ A+ W+ ERV D KV ++
Sbjct: 350 LREEVDDERRMLQMAEVWREERVQMKLIDAKVTLE 384
>At1g50660.1 68414.m05696 expressed protein similar to liver stage
antigen-1 (GI:510184) [Plasmodium falciparum]; similar
to Myosin II heavy chain, non muscle (Swiss-Prot:P08799)
[Dictyostelium discoideum]; similar to liver stage
antigen (GI:9916) [Plasmodium falciparum]; similar to
Kinesin-like protein KLPA (Swiss-Prot:P28739)
[Emericella nidulans]
Length = 725
Score = 28.3 bits (60), Expect = 0.74
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 137 LREVLEDRLQEIKRAKTWKHERVLTSPQDTKVKVQ 241
LRE ++D + ++ A+ W+ ERV D KV ++
Sbjct: 373 LREEVDDERRMLQMAEVWREERVQMKLIDAKVALE 407
>At1g68790.1 68414.m07863 expressed protein
Length = 1085
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +2
Query: 80 VQTRQLHE-LKNKERAGVAKLREVL---EDRLQEIKRAKTWKHERVLTSPQDTKVK 235
V R+ HE + K+R + + + L EDRL E+KR+ + ERV+ + + + K
Sbjct: 226 VTEREAHEAVFYKQREDLQEWEKKLTLEEDRLSEVKRSINHREERVMENERTIEKK 281
>At3g29375.1 68416.m03690 XH domain-containing protein contains Pfam
profile: PF03469: XH domain
Length = 335
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +2
Query: 71 FNNVQTRQLHELKNKERAGVAKLREVLEDRLQEI---KRAKTWKHER 202
FN + L N E+ VA LREV+ EI KR K KH +
Sbjct: 289 FNPSGRHVVPTLWNSEQGRVATLREVIAHMTHEIKTLKRKKNLKHRK 335
>At5g26610.2 68418.m03181 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = +2
Query: 77 NVQTRQLHELKNKERAGVAKLREVLEDRLQEIK 175
N+Q ++L +++ +E +AK REVL +R Q+I+
Sbjct: 120 NIQRKKL-DIEIEETEEIAKKREVLAEREQKIQ 151
>At5g26610.1 68418.m03180 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = +2
Query: 77 NVQTRQLHELKNKERAGVAKLREVLEDRLQEIK 175
N+Q ++L +++ +E +AK REVL +R Q+I+
Sbjct: 120 NIQRKKL-DIEIEETEEIAKKREVLAEREQKIQ 151
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 74 NNVQTRQLHELKNKERAG--VAKLREVLEDRLQEIKRAKTWKH 196
N Q +++HE K +E+ + + +++ E R++ RAK W H
Sbjct: 88 NKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIRAKMWGH 130
>At4g27190.1 68417.m03905 disease resistance protein (NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 985
Score = 25.8 bits (54), Expect = 4.0
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +2
Query: 65 LVFNNVQTRQLHELKNKERAGVAKLREVLEDRLQEIKRAKTWKHERVLTSPQDTKVKV 238
L++ + +R + +K K + V L E LE RL E+K + HE +LT + ++K+
Sbjct: 14 LMYESTFSRVANAIKFK--SNVKALNESLE-RLTELKGNMSEDHETLLTKDKPLRLKL 68
>At2g41070.3 68415.m05073 basic leucine zipper transcription factor
(BZIP12) nearly identical to basic leucine zipper
transcription factor [Arabidopsis thaliana] GI:21694632;
contains a bZIP transcription factor basic domain
signature (PDOC00036)
Length = 262
Score = 25.8 bits (54), Expect = 4.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 44 GKKRVSC-LVFNNVQTRQLHELKNKERAGVAKLREVLEDRLQEIK 175
G+KRV+ +V V+ RQ +KN+E A ++ R+ EIK
Sbjct: 177 GRKRVAGEIVEKTVERRQKRMIKNRESAARSRARKQAYTHELEIK 221
>At2g41070.2 68415.m05072 basic leucine zipper transcription factor
(BZIP12) nearly identical to basic leucine zipper
transcription factor [Arabidopsis thaliana] GI:21694632;
contains a bZIP transcription factor basic domain
signature (PDOC00036)
Length = 262
Score = 25.8 bits (54), Expect = 4.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 44 GKKRVSC-LVFNNVQTRQLHELKNKERAGVAKLREVLEDRLQEIK 175
G+KRV+ +V V+ RQ +KN+E A ++ R+ EIK
Sbjct: 177 GRKRVAGEIVEKTVERRQKRMIKNRESAARSRARKQAYTHELEIK 221
>At2g41070.1 68415.m05071 basic leucine zipper transcription factor
(BZIP12) nearly identical to basic leucine zipper
transcription factor [Arabidopsis thaliana] GI:21694632;
contains a bZIP transcription factor basic domain
signature (PDOC00036)
Length = 262
Score = 25.8 bits (54), Expect = 4.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 44 GKKRVSC-LVFNNVQTRQLHELKNKERAGVAKLREVLEDRLQEIK 175
G+KRV+ +V V+ RQ +KN+E A ++ R+ EIK
Sbjct: 177 GRKRVAGEIVEKTVERRQKRMIKNRESAARSRARKQAYTHELEIK 221
>At3g56850.1 68416.m06322 ABA-responsive element-binding protein 3
(AREB3) identical to ABA-responsive element binding
protein 3 (AREB3) [Arabidopsis thaliana] GI:9967421
Length = 297
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 44 GKKRVSC--LVFNNVQTRQLHELKNKERAGVAKLREVLEDRLQEIK 175
G+KRV+ +V V+ RQ +KN+E A ++ R+ EIK
Sbjct: 211 GRKRVASGEVVEKTVERRQKRMIKNRESAARSRARKQAYTHELEIK 256
>At2g20290.1 68415.m02370 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1493
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 149 LEDRLQEIKRAKTWKHERVLTSPQDT 226
LE++L+E+K + E VLT+P T
Sbjct: 1036 LEEKLKEVKLENNFLKESVLTTPVKT 1061
>At1g55590.1 68414.m06363 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 607
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 173 LSPEGDLLKLPEALQLLHVPCFSTRVADVFEHC 75
L+ EG + K L L H+P S R HC
Sbjct: 460 LNNEGTISKTLSTLDLGHMPGISDRAIHTITHC 492
>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam
PF05794: T-complex protein 11
Length = 1131
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 23 RSQLLRNGKKRVSCLVFNNVQTRQL-HELKNKERAGVAKLREVLEDRLQEIKRAKT 187
R LL KK+ V Q R + + + N+ +K+R+ LED+LQ KR ++
Sbjct: 205 RLGLLEAEKKKARARV---QQVRHVANSVSNQREIERSKMRDKLEDKLQRAKRYRS 257
>At4g37320.1 68417.m05285 cytochrome P450 family protein
Length = 495
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 245 NLVPSPSYPEVKLTHVHV 192
NL PSP+YP + H+H+
Sbjct: 30 NLPPSPAYPLPVIGHLHL 47
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 715
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +2
Query: 59 SCLVFNNVQTRQLHELKNKERAGVAKLREVLEDRLQE 169
+C++ +N + + N+E AG ++ ++ ED +QE
Sbjct: 611 NCVILSNTMITRNQDEMNQEEAGDSREKDQEEDVVQE 647
>At2g45950.1 68415.m05713 SKP1 family protein similar to
glycoprotein FP21 SP:P52285 from [Dictyostelium
discoideum]; contains Pfam profile PF01466: Skp1 family,
dimerisation domain
Length = 342
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/40 (22%), Positives = 23/40 (57%)
Frame = +2
Query: 2 HEAMAALRSQLLRNGKKRVSCLVFNNVQTRQLHELKNKER 121
H+A+ + + + KK + NN+ ++ H+L++K++
Sbjct: 213 HKAVKMSKGKKKKKKKKDQKIVSSNNIHDKESHDLRSKQQ 252
>At1g24560.1 68414.m03090 expressed protein
Length = 678
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 77 NVQTRQLHELKNKERAGVAKLREVLEDRLQEIKRAKTWK 193
N + RQ+ ELK KER + ++ D + WK
Sbjct: 504 NQRMRQIEELKEKERIANENVEGLMTDIAAAEEEITRWK 542
>At1g11690.1 68414.m01342 hypothetical protein
Length = 247
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 152 EDRLQEIKRAKTWKHERVLTSPQDTKVKVQ 241
E+ Q ++ A+ W+ ERV D K+ +Q
Sbjct: 153 EEERQMLQMAEMWREERVRVKFMDAKLALQ 182
>At5g50340.1 68418.m06235 DNA repair protein-related similar to RadA
[Pseudomonas aeruginosa] GI:1881700
Length = 491
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = +1
Query: 79 CSNTSATRVEKQGTCRSCKASGSFRRSPSGDKKS 180
C + + + G+CR+C G+ +R G + S
Sbjct: 15 CESCGHSEGQWWGSCRACHKVGTMKRFSEGSESS 48
>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
family protein similar to unknown protein (pir||T04661);
contains Pfam PF00400: WD domain, G-beta repeat (4
copies, 2 weak)|8683726|gb|AV524198.1|AV524198
Length = 1124
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 149 KLPEALQLLHVPCFSTRVADVFEHC*ILNKKH 54
+LPE+L LLH + F H + K H
Sbjct: 921 RLPESLPLLHDKVLAAAADATFSHISVHKKNH 952
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 24.6 bits (51), Expect = 9.1
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +2
Query: 14 AALRSQLLRNGKKRVSCLVFNNV----QTRQLHELKNKERAGVAKLR-EVLEDRLQEIKR 178
A+ ++ R K+RV L+ N+ Q L E +R VA L+ EV + + ++ +
Sbjct: 577 ASESAESCREAKERVQRLLKNSQSWEGQKNLLQEELKSQRDKVAGLQQEVAKAKTRQNQI 636
Query: 179 AKTWKHERVLT 211
TWK E+ T
Sbjct: 637 EATWKQEKSAT 647
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 24.6 bits (51), Expect = 9.1
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +2
Query: 14 AALRSQLLRNGKKRVSCLVFNNV----QTRQLHELKNKERAGVAKLR-EVLEDRLQEIKR 178
A+ ++ R K+RV L+ N+ Q L E +R VA L+ EV + + ++ +
Sbjct: 577 ASESAESCREAKERVQRLLKNSQSWEGQKNLLQEELKSQRDKVAGLQQEVAKAKTRQNQI 636
Query: 179 AKTWKHERVLT 211
TWK E+ T
Sbjct: 637 EATWKQEKSAT 647
>At3g58410.1 68416.m06510 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 328
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 92 QLHELKNKERAGVAKLREVLEDRLQEIKRAKT 187
Q+ + K KER+ +AKL+E E+ L ++K+ T
Sbjct: 272 QVRDKKEKERSCLAKLQET-EETLLKLKQKCT 302
>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
protein-related similar to matrix-localized MAR DNA
binding protein MFP1 GI:1771158 from [Lycopersicon
esculentum]
Length = 726
Score = 24.6 bits (51), Expect = 9.1
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +2
Query: 8 AMAALRSQLLRNGKKRVSCLVFNNVQTRQLHELKNKERAGVAKLREVLEDRLQEIKRAK 184
A+ AL Q + ++ + L N ++ R+ L KE+ AKL+ E+R +E+++AK
Sbjct: 142 ALYALARQDTKAAEETIESLK-NQLKDRE-RALVLKEKDFEAKLQHEQEERKKEVEKAK 198
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/15 (60%), Positives = 15/15 (100%)
Frame = +2
Query: 125 GVAKLREVLEDRLQE 169
GVAKL+E+++D+L+E
Sbjct: 20 GVAKLKEMVKDKLKE 34
>At2g34860.1 68415.m04280 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to Chaperone protein dnaJ (Heat shock protein 40)
(SP:Q9UXR9) {Methanosarcina thermophila}
Length = 186
Score = 24.6 bits (51), Expect = 9.1
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Frame = +1
Query: 4 RGHGGAALTATAQW*KTCFLFSIQQCSNT-------SATRVEKQ--GTCRSCKASGS 147
+ G + QW C S SN+ SA ++K+ G+CR+C+ SG+
Sbjct: 54 KAQGDQKSVSRRQWMTACVCASAALISNSYTFVSVQSAAALDKKPGGSCRNCQGSGA 110
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 131 AKLREVLEDRLQEIKRAKTWKHERVLTS 214
AKL+ +DRL E+ +++ KH+ L S
Sbjct: 76 AKLQSDFDDRLAELAQSQAQKHQLHLQS 103
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,543,725
Number of Sequences: 28952
Number of extensions: 93740
Number of successful extensions: 331
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,070,560
effective HSP length: 64
effective length of database: 10,217,632
effective search space used: 214570272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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