Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I08
(399 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q969Q0 Cluster: 60S ribosomal protein L36a-like; n=88; ... 130 7e-30
UniRef50_P83881 Cluster: 60S ribosomal protein L36a; n=44; Fungi... 129 2e-29
UniRef50_P48166 Cluster: 60S ribosomal protein L44; n=79; Eukary... 126 2e-28
UniRef50_A7P2V5 Cluster: Chromosome chr1 scaffold_5, whole genom... 113 2e-24
UniRef50_A2DAI6 Cluster: 60S ribosomal protein L44, putative; n=... 76 3e-13
UniRef50_Q3LWA2 Cluster: Ribosomal protein L44; n=1; Bigelowiell... 72 5e-12
UniRef50_O15576 Cluster: Ribosomal protein L44; n=1; Entamoeba h... 63 2e-09
UniRef50_A3BKG6 Cluster: Putative uncharacterized protein; n=1; ... 55 6e-07
UniRef50_Q9YF00 Cluster: 50S ribosomal protein L44E; n=15; Therm... 50 1e-05
UniRef50_A0RZ36 Cluster: Ribosomal protein L44E; n=1; Cenarchaeu... 50 2e-05
UniRef50_Q9HIX1 Cluster: 50S ribosomal protein L44E; n=5; Archae... 44 0.001
UniRef50_O59603 Cluster: 50S ribosomal protein L44E; n=15; Eurya... 38 0.096
UniRef50_A3BKG7 Cluster: Putative uncharacterized protein; n=1; ... 36 0.22
UniRef50_Q9VQ26 Cluster: Rab3 GTPase-activating protein catalyti... 33 1.6
UniRef50_A0H4I0 Cluster: Putative uncharacterized protein; n=1; ... 32 4.8
UniRef50_A5NZ47 Cluster: LigA; n=1; Methylobacterium sp. 4-46|Re... 31 8.3
>UniRef50_Q969Q0 Cluster: 60S ribosomal protein L36a-like; n=88;
Eukaryota|Rep: 60S ribosomal protein L36a-like - Homo
sapiens (Human)
Length = 106
Score = 130 bits (315), Expect = 7e-30
Identities = 63/106 (59%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 41 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 220
MVNVPK RRT+ +QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 221 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 352
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>UniRef50_P83881 Cluster: 60S ribosomal protein L36a; n=44;
Fungi/Metazoa group|Rep: 60S ribosomal protein L36a -
Homo sapiens (Human)
Length = 106
Score = 129 bits (312), Expect = 2e-29
Identities = 62/106 (58%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 41 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 220
MVNVPK RRT+ +QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 221 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 352
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>UniRef50_P48166 Cluster: 60S ribosomal protein L44; n=79;
Eukaryota|Rep: 60S ribosomal protein L44 -
Caenorhabditis elegans
Length = 105
Score = 126 bits (304), Expect = 2e-28
Identities = 60/105 (57%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Frame = +2
Query: 41 MVNVPKQRRTYXXXXXXXXXXXX-SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 217
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 218 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 352
IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61 AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
>UniRef50_A7P2V5 Cluster: Chromosome chr1 scaffold_5, whole genome
shotgun sequence; n=9; Eukaryota|Rep: Chromosome chr1
scaffold_5, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 151
Score = 113 bits (271), Expect = 2e-24
Identities = 55/100 (55%), Positives = 65/100 (65%), Gaps = 2/100 (2%)
Frame = +2
Query: 44 VNVPKQRRTYXXXXXXXXXXXX--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 217
VNVPK ++TY +QYKK K+ AAQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 48 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 107
Query: 218 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 337
IVLRL+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 108 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 147
>UniRef50_A2DAI6 Cluster: 60S ribosomal protein L44, putative; n=1;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L44,
putative - Trichomonas vaginalis G3
Length = 104
Score = 75.8 bits (178), Expect = 3e-13
Identities = 38/98 (38%), Positives = 52/98 (53%)
Frame = +2
Query: 41 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 220
MV+ PK ++ + SQ + +ERH+A GRRRYDRKQ+G+GG+ KPI
Sbjct: 1 MVHHPKTKKFFCKFCKKHTMCKVSQASRGEERHSALGRRRYDRKQKGFGGRVKPILRRSK 60
Query: 221 XXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRK 334
I LR C CK + L R + FE +KK+K
Sbjct: 61 KTSKKISLRFTCQSCKKATMYCLGRLRKFEWTVEKKKK 98
>UniRef50_Q3LWA2 Cluster: Ribosomal protein L44; n=1; Bigelowiella
natans|Rep: Ribosomal protein L44 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 99
Score = 71.7 bits (168), Expect = 5e-12
Identities = 35/91 (38%), Positives = 47/91 (51%)
Frame = +2
Query: 41 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 220
MV P+ ++ Y +YK K AQG+RRYDRKQQGYGGQ+KP+F
Sbjct: 1 MVKYPRNQKKYCKFCKVHVEMKSYEYKPGKASLNAQGKRRYDRKQQGYGGQTKPVFRKQV 60
Query: 221 XXXXXIVLRLECADCKVRSQVALKRCKHFEL 313
++L C CK +LKR K F++
Sbjct: 61 KNTKKPSIKLSCEICKKEFIKSLKRTKRFQI 91
>UniRef50_O15576 Cluster: Ribosomal protein L44; n=1; Entamoeba
histolytica|Rep: Ribosomal protein L44 - Entamoeba
histolytica
Length = 80
Score = 63.3 bits (147), Expect = 2e-09
Identities = 27/62 (43%), Positives = 37/62 (59%)
Frame = +2
Query: 113 QYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALK 292
QYKK K+ QG+RRYDRKQQG+GGQ+KP+F + ++EC CK+ +
Sbjct: 9 QYKKGKDSLHVQGKRRYDRKQQGFGGQTKPVFKKKAKQQRRL-FKIECTKCKIAQSLRES 67
Query: 293 RC 298
C
Sbjct: 68 TC 69
>UniRef50_A3BKG6 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 89
Score = 54.8 bits (126), Expect = 6e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +2
Query: 236 IVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 337
IVL+L+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 52 IVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 85
>UniRef50_Q9YF00 Cluster: 50S ribosomal protein L44E; n=15;
Thermoprotei|Rep: 50S ribosomal protein L44E - Aeropyrum
pernix
Length = 95
Score = 50.4 bits (115), Expect = 1e-05
Identities = 30/87 (34%), Positives = 37/87 (42%)
Frame = +2
Query: 53 PKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXX 232
PK+ RTY +QY+ K R A G RRY RKQ+GYG Q +P
Sbjct: 4 PKRIRTYCPRCNTHTEHRVAQYRAGKRRAMALGERRYRRKQEGYGSQRRPEQKRFAKVTK 63
Query: 233 XIVLRLECADCKVRSQVALKRCKHFEL 313
VL + C C + R K EL
Sbjct: 64 KQVLVITCTVCGRKRPFLGIRLKRLEL 90
>UniRef50_A0RZ36 Cluster: Ribosomal protein L44E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L44E - Cenarchaeum
symbiosum
Length = 93
Score = 49.6 bits (113), Expect = 2e-05
Identities = 29/86 (33%), Positives = 35/86 (40%)
Frame = +2
Query: 53 PKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXX 232
PKQ R Y S YK K R +A G RR+ ++GYGGQ P
Sbjct: 4 PKQIRRYCPKCKKHTTQKVSIYKAGKRRASAIGERRHAEDKKGYGGQKFPKLAKPAKVTK 63
Query: 233 XIVLRLECADCKVRSQVALKRCKHFE 310
+ L C DCK + R K FE
Sbjct: 64 KVTRLLTCPDCKKKFNTYGLRVKKFE 89
>UniRef50_Q9HIX1 Cluster: 50S ribosomal protein L44E; n=5;
Archaea|Rep: 50S ribosomal protein L44E - Thermoplasma
acidophilum
Length = 93
Score = 44.0 bits (99), Expect = 0.001
Identities = 26/90 (28%), Positives = 36/90 (40%)
Frame = +2
Query: 44 VNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXX 223
+ +PK+ TY + +K K G+RR+ R GYGG +P F
Sbjct: 1 MKMPKKIMTYCPYCKKHTSHSVERVRKRKASELKAGQRRFRRVTSGYGGFPRPKFEGREK 60
Query: 224 XXXXIVLRLECADCKVRSQVALKRCKHFEL 313
I LRL C +C R K FE+
Sbjct: 61 PTKRIALRLVCDECHKAITPPGIRAKKFEI 90
>UniRef50_O59603 Cluster: 50S ribosomal protein L44E; n=15;
Euryarchaeota|Rep: 50S ribosomal protein L44E -
Pyrococcus horikoshii
Length = 94
Score = 37.5 bits (83), Expect = 0.096
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +2
Query: 53 PKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXX 232
PKQ RTY + K+ + G+RR+ R +GYGG +P
Sbjct: 4 PKQIRTYCPYCKRHTIHKVERVKRRPRSELSAGQRRFRRVLKGYGGFPRPKPEGREKPVK 63
Query: 233 XIVLRLECADC-KVRSQVALKRCKHFEL 313
+ LR C C + ++ R K FEL
Sbjct: 64 KLDLRFVCTVCGRAHTRGKGFRVKRFEL 91
>UniRef50_A3BKG7 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 76
Score = 36.3 bits (80), Expect = 0.22
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +2
Query: 284 ALKRCKHFELGGDKKRKG 337
+++RCKHFE+GGDKK KG
Sbjct: 55 SVQRCKHFEIGGDKKGKG 72
>UniRef50_Q9VQ26 Cluster: Rab3 GTPase-activating protein catalytic
subunit; n=4; Sophophora|Rep: Rab3 GTPase-activating
protein catalytic subunit - Drosophila melanogaster
(Fruit fly)
Length = 916
Score = 33.5 bits (73), Expect = 1.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 329 SSCHHQAQSAYNASGPPVTSPCSLHI 252
+SCHH S N+ GPP+ S LHI
Sbjct: 98 TSCHHDLMSTGNSFGPPIRSSQELHI 123
>UniRef50_A0H4I0 Cluster: Putative uncharacterized protein; n=1;
Chloroflexus aggregans DSM 9485|Rep: Putative
uncharacterized protein - Chloroflexus aggregans DSM
9485
Length = 141
Score = 31.9 bits (69), Expect = 4.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 125 TFCTETLCELCDICIF 78
T C TLC+LCD+C F
Sbjct: 30 TLCVSTLCDLCDLCAF 45
>UniRef50_A5NZ47 Cluster: LigA; n=1; Methylobacterium sp. 4-46|Rep:
LigA - Methylobacterium sp. 4-46
Length = 593
Score = 31.1 bits (67), Expect = 8.3
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 339 CPFLFLSPPSSKCLQRFRATCDLTLQSAHSRRS 241
CP SPP+S R ATC LT +SA RR+
Sbjct: 533 CPRSTASPPTSTNSWRSAATCTLTRRSASRRRA 565
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 330,268,409
Number of Sequences: 1657284
Number of extensions: 5358696
Number of successful extensions: 13297
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13285
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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