Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I08
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)              128   1e-30
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)           62   1e-10
SB_5824| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.46 
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_47692| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4)             29   1.8  
SB_30089| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4)             29   1.8  
SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2)                  25   2.3  
SB_20022| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-20)       28   2.4  
SB_36787| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3)             28   2.4  
SB_29727| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)             28   3.2  
SB_17270| Best HMM Match : ABC_tran (HMM E-Value=5.1e-08)              27   4.3  
SB_23929| Best HMM Match : PT (HMM E-Value=0.21)                       27   5.6  
SB_2961| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.6  
SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)                  27   7.4  
SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
          Length = 113

 Score =  128 bits (310), Expect = 1e-30
 Identities = 61/106 (57%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
 Frame = +2

Query: 41  MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 214
           +VNVPKQR+T+              +QYK  K    AQG+RRYDRKQ G+GGQ+KP+F  
Sbjct: 8   VVNVPKQRKTFCKGKKCRRHTLHKVTQYKTGKASLFAQGKRRYDRKQSGFGGQTKPVFHK 67

Query: 215 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 352
                  IVLR+EC  CK R Q+ LKRCKHFELGGDKKRKGQMIQF
Sbjct: 68  KAKTTKKIVLRMECTQCKYRKQMPLKRCKHFELGGDKKRKGQMIQF 113


>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
          Length = 39

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = +2

Query: 236 IVLRLECADCKVRSQVALKRCKHFELGGDKKRK 334
           IVLR+EC  CK R Q+ LKRCKHFELGGDKKRK
Sbjct: 7   IVLRMECTQCKYRKQMPLKRCKHFELGGDKKRK 39


>SB_5824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 122 FCTETLCELCDICIFCSMFCAVWVRSPFLR 33
           +C      +C +CI CS + AVWVR  F R
Sbjct: 158 YCMVVSLTVC-LCIICSSYSAVWVRVHFKR 186


>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 113 ETLCELCDICIFCSMFCAVWVRS 45
           E+ C LCD  +FC  FC + ++S
Sbjct: 260 ESFCRLCDNYLFCLKFCDLRIKS 282


>SB_47692| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4)
          Length = 162

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 113 ETLCELCDICIFCSMFCAVWVRS 45
           E+ C LCD  +FC  FC + ++S
Sbjct: 95  ESSCRLCDDYLFCLKFCDLRIKS 117


>SB_30089| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4)
          Length = 119

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 113 ETLCELCDICIFCSMFCAVWVRS 45
           E+ C LCD  +FC  FC + ++S
Sbjct: 52  ESSCRLCDDYLFCLKFCDLRIKS 74


>SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2)
          Length = 474

 Score = 24.6 bits (51), Expect(2) = 2.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 272 RSQVALKRCKHFELGGD 322
           +S++A  RC H  LGGD
Sbjct: 419 QSRIAFPRCAHGPLGGD 435



 Score = 22.2 bits (45), Expect(2) = 2.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 125 SKERHAAQGRRRYDRKQQGYGGQSKPIF 208
           ++ RH  + RRRY +   G   QS+  F
Sbjct: 397 AERRHNGRDRRRYGQPDSGDVRQSRIAF 424


>SB_20022| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-20)
          Length = 392

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = -2

Query: 350 TGSFVPSSSCH-HQAQSAYNASGPPVTSPCSLHIPDEVQFSL*FL--PSF*RWVWIDHHN 180
           +G+  P S+C    A+  + AS   +     +  P EV     F   P   +WVW +H N
Sbjct: 80  SGNICPVSNCRITTAKGNFRASDAVIFH--GVMTPHEVTSGELFKYKPKDQKWVWYEHEN 137

Query: 179 PVVYGRN 159
           PV    N
Sbjct: 138 PVKMSNN 144


>SB_36787| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3)
          Length = 280

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 104 CELCDICIFCSMFCAVWVRS 45
           C LCD  +FC  FC + +RS
Sbjct: 217 CRLCDNYLFCLKFCDLRIRS 236


>SB_29727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 104 CELCDICIFCSMFCAVWVRS 45
           C LCD  +FC  FC + +RS
Sbjct: 78  CRLCDNYLFCLKFCDLRIRS 97


>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1442

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 248  LECADCKVRSQVALKRCKHFELG 316
            +EC +CK R  +A   C HF+ G
Sbjct: 1113 IECPNCKFRYDLAKGGCMHFKCG 1135


>SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)
          Length = 453

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 345 IICPFLFLSPPSSKCLQRFRATCDLTLQSAHSRRSTIFFV 226
           ++  FL L  P   C++ FR T    +QS  +    I+F+
Sbjct: 262 VVFSFLVLFGPPGLCMKHFRFTSQFLVQSNSAMNFFIYFI 301


>SB_17270| Best HMM Match : ABC_tran (HMM E-Value=5.1e-08)
          Length = 771

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 335 PSSSCHHQAQSAYNASGPPVTSPCSLHIPDEVQFSL 228
           PSS+   +  SAYN S    ++P +   PD  QF L
Sbjct: 21  PSSALTREMCSAYNVSSANSSTPTNSSSPDGGQFGL 56


>SB_23929| Best HMM Match : PT (HMM E-Value=0.21)
          Length = 125

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 104 CELCDICIFCSMFCAVWVRS 45
           C LCD  +FC  FC + ++S
Sbjct: 62  CRLCDDYLFCLKFCDLRIKS 81


>SB_2961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 104 CELCDICIFCSMFCAVWVRS 45
           C LCD  +FC  FC + ++S
Sbjct: 52  CRLCDDYLFCLKFCDLRIKS 71


>SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)
          Length = 501

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 122 KSKERHAAQGRRRYDRKQQGY 184
           K K+RHA Q    YD+K Q Y
Sbjct: 471 KQKDRHARQLGINYDKKHQNY 491


>SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 272 RSQVALKRCKHFELGGDKKR 331
           +S++A  RC H  LGGD +R
Sbjct: 495 QSRIASPRCAHRPLGGDSRR 514


>SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 152 CPERRAFP*TFCTETLCELCDICIFCSMFCAVWVRSPF 39
           CP  +  P    +   C    +C+ CSM  + W + PF
Sbjct: 242 CPCLQCAPCIVFSALCCPFWSLCLLCSMINSCW-KQPF 278


>SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 272 RSQVALKRCKHFELGGD 322
           RS++A  RC H  LGGD
Sbjct: 504 RSRIAFTRCAHGPLGGD 520


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,880,041
Number of Sequences: 59808
Number of extensions: 199221
Number of successful extensions: 488
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)